RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SLC10A2Q12908 348 aaPredicted RBP12□□□□□ -0.49
SQSTM1-206ENST00000466342 RFTN1Q14699 578 aaPredicted RBP12□□□□□ -0.49
SQSTM1-206ENST00000466342 POM121L1PQ3SYA9 428 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 SETMARQ53H47 684 aaPredicted RBP12□□□□□ -0.49
SQSTM1-206ENST00000466342 CARD16Q5EG05 197 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 ARSIQ5FYB1 569 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 KAZNQ674X7 775 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 DPY19L3Q6ZPD9 716 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 ERN2Q76MJ5 926 aaKnown RBP12□□□□□ -0.49
SQSTM1-206ENST00000466342 REXO1L1PQ8IX06 675 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 CHST14Q8NCH0 376 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 OR2AP1Q8NGE2 309 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 HDAC11Q96DB2 347 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 ZNF599Q96NL3 588 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 HEPHQ9BQS7 1158 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 HDAC8Q9BY41 377 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 TM6SF2Q9BZW4 377 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 WDR70Q9NW82 654 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 DTLQ9NZJ0 730 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 EFR3BQ9Y2G0 817 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 ZFC3H1O60293 1989 aaKnown RBP11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 LRRK1Q38SD2 2015 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 ITPR2Q14571 2701 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 LY6G6EA0A0G2JKS1 128 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 LEFTY1O75610 366 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 MAP3K6O95382 1288 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 IGSF6O95976 241 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 PEX11BO96011 259 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 PYGMP11217 842 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 MAT2AP31153 395 aaKnown RBP11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 CETN2P41208 172 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 NR2C2P49116 596 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 CCNHP51946 323 aaPredicted RBP11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 RHOAP61586 193 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 SNRPD1P62314 119 aaKnown RBP11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 DYNLT1P63172 113 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 LLGL1Q15334 1064 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 CYTH1Q15438 398 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 IGFBP7Q16270 282 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 TBR1Q16650 682 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 TMCO4Q5TGY1 634 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 MEI1Q5TIA1 1274 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 TIGD7Q6NT04 549 aaPredicted RBP11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 FOXR1Q6PIV2 292 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 NPNTQ6UXI9 565 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 WDR36Q8NI36 951 aaKnown RBP11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 IFI44Q8TCB0 444 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 FATE1Q969F0 183 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 ARRDC3Q96B67 414 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 KLHDC7BQ96G42 594 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 GDAP1L1Q96MZ0 367 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 OLFM3Q96PB7 478 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 TSGA13Q96PP4 275 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 CINPQ9BW66 212 aaPredicted RBP11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 GEMIN8Q9NWZ8 242 aaKnown RBP11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 NLGN3Q9NZ94 848 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 LHX3Q9UBR4 397 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 PYCARDQ9ULZ3 195 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 HEY1Q9Y5J3 304 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 WASF2Q9Y6W5 498 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 U3KQA8 63 aa11.99□□□□□ -0.49
SQSTM1-206ENST00000466342 DOPEY1Q5JWR5 2465 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 NBASA2RRP1 2371 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 SCN8AQ9UQD0 1980 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 PMS2P1A4D2B8 440 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 NEMP2A6NFY4 417 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 NOBOXO60393 691 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 ITGA2BP08514 1039 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 CCNCP24863 283 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 ITGB7P26010 798 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 DNA2P51530 1060 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 NEK3P51956 506 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 ADCY2Q08462 1091 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 PPIDQ08752 370 aaKnown RBP11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 SLC10A7Q0GE19 358 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 LBRQ14739 615 aaKnown RBP11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 ATXN7L2Q5T6C5 722 aaPredicted RBP11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 HIST2H2BCQ6DN03 193 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 BBS12Q6ZW61 710 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 BZW1Q7L1Q6 419 aaKnown RBP11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 ZSCAN30Q86W11 494 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 HORMAD1Q86X24 394 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 FAM174AQ8TBP5 190 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 GRIN3AQ8TCU5 1115 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 NSMCE1Q8WV22 266 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 DUSP23Q9BVJ7 150 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 HEMGNQ9BXL5 484 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 OSBPL8Q9BZF1 889 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 EPN3Q9H201 632 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 TRMT1Q9NXH9 659 aaKnown RBP11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 HECAQ9UBI9 543 aaPredicted RBP11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 SRPK3Q9UPE1 567 aa11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 SPTBN1Q01082 2364 aaKnown RBP11.98□□□□□ -0.49
SQSTM1-206ENST00000466342 A0A1W2PQU0 124 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 GOLGA6L9A6NEM1 432 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 RNF103O00237 685 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 PPP1R12AO14974 1030 aaPredicted RBP11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 SLC31A1O15431 190 aa11.97□□□□□ -0.49
SQSTM1-206ENST00000466342 AP1G1O43747 822 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms