RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 TMEM47Q9BQJ4 181 aa5.98□□□□□ -1.45
PTCD3-205ENST00000464541 DDX31Q9H8H2 851 aaKnown RBP5.98□□□□□ -1.45
PTCD3-205ENST00000464541 HINT3Q9NQE9 182 aaKnown RBP5.98□□□□□ -1.45
PTCD3-205ENST00000464541 CNGB3Q9NQW8 809 aa5.98□□□□□ -1.45
PTCD3-205ENST00000464541 PCDHB16Q9NRJ7 776 aa5.98□□□□□ -1.45
PTCD3-205ENST00000464541 SMARCAL1Q9NZC9 954 aa5.98□□□□□ -1.45
PTCD3-205ENST00000464541 PCDHGB1Q9Y5G3 927 aa5.98□□□□□ -1.45
PTCD3-205ENST00000464541 CEPT1Q9Y6K0 416 aa5.98□□□□□ -1.45
PTCD3-205ENST00000464541 CAPN7Q9Y6W3 813 aa5.98□□□□□ -1.45
PTCD3-205ENST00000464541 DENND3A2RUS2 1198 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 TGFB1I1O43294 461 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 PLRG1O43660 514 aaKnown RBP5.97□□□□□ -1.45
PTCD3-205ENST00000464541 PAGE4O60829 102 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 RFPL2O75678 378 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 ZBTB11O95625 1053 aaPredicted RBP5.97□□□□□ -1.45
PTCD3-205ENST00000464541 SSTR2P30874 369 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 PIP4K2AP48426 406 aaPredicted RBP5.97□□□□□ -1.45
PTCD3-205ENST00000464541 PDLIM4P50479 330 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 SEC61BP60468 96 aaKnown RBP5.97□□□□□ -1.45
PTCD3-205ENST00000464541 SORDQ00796 357 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 DLG1Q12959 904 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 SLC39A14Q15043 492 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 TSTQ16762 297 aaKnown RBP5.97□□□□□ -1.45
PTCD3-205ENST00000464541 C2orf68Q2NKX9 166 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 ALG11Q2TAA5 492 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 RHBDF2Q6PJF5 856 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 KRBA2Q6ZNG9 492 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 SPATA6LQ8N4H0 392 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 PPHLN1Q8NEY8 458 aaKnown RBP5.97□□□□□ -1.45
PTCD3-205ENST00000464541 INTS12Q96CB8 462 aaKnown RBP5.97□□□□□ -1.45
PTCD3-205ENST00000464541 BICD1Q96G01 975 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 TMEM68Q96MH6 324 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 GAREM1Q9H706 876 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 PCDH9Q9HC56 1237 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 GPR108Q9NPR9 543 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 ABI3Q9P2A4 366 aa5.97□□□□□ -1.45
PTCD3-205ENST00000464541 TDRD9Q8NDG6 1382 aaKnown RBP5.96□□□□□ -1.45
PTCD3-205ENST00000464541 MAGEA13PA6NCF6 341 aa5.96□□□□□ -1.46
PTCD3-205ENST00000464541 AKR1B15C9JRZ8 316 aaPredicted RBP5.96□□□□□ -1.46
PTCD3-205ENST00000464541 F5H0A9 414 aaPredicted RBP5.96□□□□□ -1.46
PTCD3-205ENST00000464541 CYC1P08574 325 aa5.96□□□□□ -1.46
PTCD3-205ENST00000464541 CHMP24386 653 aa5.96□□□□□ -1.46
PTCD3-205ENST00000464541 DDX10Q13206 875 aaKnown RBP5.96□□□□□ -1.46
PTCD3-205ENST00000464541 SNTA1Q13424 505 aa5.96□□□□□ -1.46
PTCD3-205ENST00000464541 IZUMO4Q1ZYL8 232 aa5.96□□□□□ -1.46
PTCD3-205ENST00000464541 SETMARQ53H47 684 aaPredicted RBP5.96□□□□□ -1.46
PTCD3-205ENST00000464541 KCTD18Q6PI47 426 aaPredicted RBP5.96□□□□□ -1.46
PTCD3-205ENST00000464541 PRSS57Q6UWY2 283 aa5.96□□□□□ -1.46
PTCD3-205ENST00000464541 C18orf65Q6ZTR6 163 aa5.96□□□□□ -1.46
PTCD3-205ENST00000464541 TMTC3Q6ZXV5 915 aa5.96□□□□□ -1.46
PTCD3-205ENST00000464541 ARMC9Q7Z3E5 817 aa5.96□□□□□ -1.46
PTCD3-205ENST00000464541 LILRB1Q8NHL6 650 aaPredicted RBP5.96□□□□□ -1.46
PTCD3-205ENST00000464541 TDRD7Q8NHU6 1098 aaKnown RBP5.96□□□□□ -1.46
PTCD3-205ENST00000464541 NDST4Q9H3R1 872 aa5.96□□□□□ -1.46
PTCD3-205ENST00000464541 KIF9Q9HAQ2 790 aa5.96□□□□□ -1.46
PTCD3-205ENST00000464541 MCM9Q9NXL9 1143 aa5.96□□□□□ -1.46
PTCD3-205ENST00000464541 ZNF224Q9NZL3 707 aa5.96□□□□□ -1.46
PTCD3-205ENST00000464541 DLGAP2Q9P1A6 1054 aa5.96□□□□□ -1.46
PTCD3-205ENST00000464541 MKLN1Q9UL63 735 aa5.96□□□□□ -1.46
PTCD3-205ENST00000464541 TTC7AQ9ULT0 858 aaPredicted RBP5.96□□□□□ -1.46
PTCD3-205ENST00000464541 SNX9Q9Y5X1 595 aa5.96□□□□□ -1.46
PTCD3-205ENST00000464541 IFNL4K9M1U5 179 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 MBD4O95243 580 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 TBX18O95935 607 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 FTCDO95954 541 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 SPARCP09486 303 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 ZNF182P17025 639 aaPredicted RBP5.95□□□□□ -1.46
PTCD3-205ENST00000464541 PAX3P23760 479 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 ICAM3P32942 547 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 GAS1P54826 345 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 DDR1Q08345 913 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 GRSF1Q12849 480 aaKnown RBP eCLIP5.95□□□□□ -1.46
PTCD3-205ENST00000464541 TMEM115Q12893 351 aaPredicted RBP5.95□□□□□ -1.46
PTCD3-205ENST00000464541 CSTF3Q12996 717 aaKnown RBP5.95□□□□□ -1.46
PTCD3-205ENST00000464541 DCTN2Q13561 401 aaKnown RBP5.95□□□□□ -1.46
PTCD3-205ENST00000464541 TNFAIP1Q13829 316 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 SF3B4Q15427 424 aaKnown RBP eCLIP5.95□□□□□ -1.462e-6■■□□□ 12.2
PTCD3-205ENST00000464541 CTF1Q16619 201 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 COL28A1Q2UY09 1125 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 KLHL22Q53GT1 634 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 SLC45A4Q5BKX6 768 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 SPSB3Q6PJ21 355 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 TSSK4Q6SA08 328 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 CCNI2Q6ZMN8 369 aaPredicted RBP5.95□□□□□ -1.46
PTCD3-205ENST00000464541 PQLC2Q6ZP29 291 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 CACNA2D4Q7Z3S7 1137 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 CNTROBQ8N137 903 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 IGSF21Q96ID5 467 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 HARBI1Q96MB7 349 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 C1QTNF4Q9BXJ3 329 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 PPP1R3EQ9H7J1 279 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 FBRSL1Q9HCM7 1045 aaKnown RBP5.95□□□□□ -1.46
PTCD3-205ENST00000464541 SIX4Q9UIU6 781 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 LRP12Q9Y561 859 aa5.95□□□□□ -1.46
PTCD3-205ENST00000464541 A0A087X0M5 115 aa5.94□□□□□ -1.46
PTCD3-205ENST00000464541 FAM237AA0A1B0GTK4 181 aa5.94□□□□□ -1.46
PTCD3-205ENST00000464541 A0A1B0GX30 115 aa5.94□□□□□ -1.46
PTCD3-205ENST00000464541 PLSCR5A0PG75 271 aa5.94□□□□□ -1.46
PTCD3-205ENST00000464541 SOCS6O14544 535 aa5.94□□□□□ -1.46
PTCD3-205ENST00000464541 PMS2P2O95744 297 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms