RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SCUBE1Q8IWY4 988 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 MIER2Q8N344 545 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 ANKLE1Q8NAG6 615 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 ASZ1Q8WWH4 475 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 SMG9Q9H0W8 520 aaKnown RBP7.41□□□□□ -1.22
SYNE1-213ENST00000448038 CCDC167Q9P0B6 97 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 ERVW-1Q9UQF0 538 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 PHIPQ8WWQ0 1821 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 GRIN2DO15399 1336 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 PSMD12O00232 456 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-213ENST00000448038 BIRC5O15392 142 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 TEX28O15482 410 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 COCHO43405 550 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 TPST1O60507 370 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 GOT2P00505 430 aaKnown RBP7.41□□□□□ -1.22
SYNE1-213ENST00000448038 AMD1P17707 334 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 RFX3P48380 749 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 CCDC85BQ15834 202 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-213ENST00000448038 CARD16Q5EG05 197 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 FAM182AQ5T1J6 154 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 KYQ8NBH2 561 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 SLC22A17Q8WUG5 538 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 OSCP1Q8WVF1 389 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 CNDP1Q96KN2 507 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 SH3GL1Q99961 368 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 MECRQ9BV79 373 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 TRMT61BQ9BVS5 477 aaKnown RBP7.41□□□□□ -1.22
SYNE1-213ENST00000448038 SLC17A7Q9P2U7 560 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 NDUFAF1Q9Y375 327 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 BACE2Q9Y5Z0 518 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 MYH7BA7E2Y1 1941 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-213ENST00000448038 MEI4A8MW99 385 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 FFAR3O14843 346 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 GPR42O15529 346 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 ZW10O43264 779 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 GJB5O95377 273 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 NQO1P15559 274 aaKnown RBP7.41□□□□□ -1.22
SYNE1-213ENST00000448038 PITX1P78337 314 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-213ENST00000448038 TCEAL1Q15170 157 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 PDGFRLQ15198 375 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 PHKG1Q16816 387 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 SMYD5Q6GMV2 418 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 ZNF438Q7Z4V0 828 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 HORMAD1Q86X24 394 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 POU5F2Q8N7G0 328 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 NLNQ9BYT8 704 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 KCTD5Q9NXV2 234 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 MTRRQ9UBK8 725 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 FKBPLQ9UIM3 349 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 SNX6Q9UNH7 406 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 MFHAS1Q9Y4C4 1052 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 DTNAQ9Y4J8 743 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 COL24A1Q17RW2 1714 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 KIAA0100Q14667 2235 aaKnown RBP7.41□□□□□ -1.22
SYNE1-213ENST00000448038 TTC24A2A3L6 582 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-213ENST00000448038 LEFTY2O00292 366 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 CNTN5O94779 1100 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 CYP11A1P05108 521 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 PDHA1P08559 390 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 PTPN4P29074 926 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 EEF1DP29692 281 aaKnown RBP7.41□□□□□ -1.22
SYNE1-213ENST00000448038 EIF2B5Q13144 721 aaKnown RBP7.41□□□□□ -1.22
SYNE1-213ENST00000448038 LRRC73Q5JTD7 316 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 MSANTD2Q6P1R3 559 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 TXNDC11Q6PKC3 985 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 ADGRD1Q6QNK2 874 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-213ENST00000448038 KIAA0408Q6ZU52 694 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 DEFB107AQ8IZN7 70 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 ZSCAN18Q8TBC5 510 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-213ENST00000448038 GPR21Q99679 349 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 CCDC90BQ9GZT6 254 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 SLC40A1Q9NP59 571 aa7.41□□□□□ -1.22
SYNE1-213ENST00000448038 MRPS17Q9Y2R5 130 aaKnown RBP7.41□□□□□ -1.22
SYNE1-213ENST00000448038 LY75O60449 1722 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 DYRK3O43781 588 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 ATG13O75143 517 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 DNAJC8O75937 253 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-213ENST00000448038 LIMK2P53671 638 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 NAA20P61599 178 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 TAF1AQ15573 450 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-213ENST00000448038 UBE2R2Q712K3 238 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-213ENST00000448038 CDYL2Q8N8U2 506 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 NAT8LQ8N9F0 302 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 SLCO2A1Q92959 643 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 SLC2A13Q96QE2 648 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 FERD3LQ96RJ6 166 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 RABGEF1Q9UJ41 708 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 GGA2Q9UJY4 613 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 SNX5Q9Y5X3 404 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 M0QZQ0 153 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 RHOP08100 348 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 ABCB1P08183 1280 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-213ENST00000448038 HNRNPLP14866 589 aaKnown RBP eCLIP7.4□□□□□ -1.22
SYNE1-213ENST00000448038 LBPP18428 481 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 CDH2P19022 906 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-213ENST00000448038 SEMG2Q02383 582 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 C2orf27AQ580R0 203 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 CAMK1DQ8IU85 385 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms