RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 MRASO14807 208 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 PHGDHO43175 533 aaKnown RBP8.59□□□□□ -1.03
HPS4-206ENST00000439453 ITGB3P05106 788 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 NFICP08651 508 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 CXCL8P10145 99 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 MAPK10P53779 464 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 IFRD2Q12894 506 aaPredicted RBP8.59□□□□□ -1.03
HPS4-206ENST00000439453 SQLEQ14534 574 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 GRM3Q14832 879 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 GOLGA7BQ2TAP0 167 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 ANO4Q32M45 955 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 TBCELQ5QJ74 424 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 PMF1Q6P1K2 205 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 TMEM135Q86UB9 458 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 SCUBE3Q8IX30 993 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 KCTD4Q8WVF5 259 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 CCM2LQ9NUG4 571 aaPredicted RBP8.59□□□□□ -1.03
HPS4-206ENST00000439453 CCDC167Q9P0B6 97 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 AURKCQ9UQB9 309 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 TCAF1Q9Y4C2 921 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 SNX9Q9Y5X1 595 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 RNF103-CHMP3A0A140T963 221 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 KRBA1A5PL33 1030 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 FAM149AA5PLN7 773 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 GOLGA8TH3BQL2 631 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 MFSD11O43934 449 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 USP12O75317 370 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 OXSR1O95747 527 aaPredicted RBP8.59□□□□□ -1.04
HPS4-206ENST00000439453 BCL10O95999 233 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 GOT1P17174 413 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 JAK1P23458 1154 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 SLC7A2P52569 658 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 NDST1P52848 882 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 POU5F1BQ06416 359 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 FAM45BPQ6NSW5 357 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 MPZL3Q6UWV2 235 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 IGFN1Q86VF2 1251 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 CDR2LQ86X02 465 aaPredicted RBP8.59□□□□□ -1.04
HPS4-206ENST00000439453 ZNF567Q8N184 647 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 FSTL5Q8N475 847 aaPredicted RBP8.59□□□□□ -1.04
HPS4-206ENST00000439453 FAM45AQ8TCE6 357 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 SP7Q8TDD2 431 aaPredicted RBP8.59□□□□□ -1.04
HPS4-206ENST00000439453 SEPT8Q92599 483 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 TAMM41Q96BW9 452 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 ZNF689Q96CS4 500 aaPredicted RBP8.59□□□□□ -1.04
HPS4-206ENST00000439453 SNX27Q96L92 541 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 OLFM1Q99784 485 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 RGS18Q9NS28 235 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 IARS2Q9NSE4 1012 aaKnown RBP8.59□□□□□ -1.04
HPS4-206ENST00000439453 FAM49BQ9NUQ9 324 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 SEPT3Q9UH03 358 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 VANGL2Q9ULK5 521 aa8.59□□□□□ -1.04
HPS4-206ENST00000439453 CCDC162PA2VCL2 907 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 KPNA4O00629 521 aaPredicted RBP8.58□□□□□ -1.04
HPS4-206ENST00000439453 SNRPB2P08579 225 aaKnown RBP8.58□□□□□ -1.04
HPS4-206ENST00000439453 ARSAP15289 507 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 MATN1P21941 496 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 FAM189BP81408 668 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 TNK2Q07912 1038 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 FRG1Q14331 258 aaKnown RBP8.58□□□□□ -1.04
HPS4-206ENST00000439453 ATP6AP1Q15904 470 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 PITRM1Q5JRX3 1037 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 UBXN11Q5T124 520 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 SLC2A7Q6PXP3 512 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 KCNMB4Q86W47 210 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 TMEM192Q8IY95 271 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 OFCC1Q8IZS5 231 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 CCDC185Q8N715 623 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 SPPL2BQ8TCT7 592 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 C17orf50Q8WW18 174 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 MFSD3Q96ES6 412 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 CNDP2Q96KP4 475 aaKnown RBP8.58□□□□□ -1.04
HPS4-206ENST00000439453 TUBA1CQ9BQE3 449 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 MCMBPQ9BTE3 642 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 C9orf16Q9BUW7 83 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 RPF1Q9H9Y2 349 aaKnown RBP8.58□□□□□ -1.04
HPS4-206ENST00000439453 CD320Q9NPF0 282 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 GTSE1Q9NYZ3 720 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 BFARQ9NZS9 450 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 FIS1Q9Y3D6 152 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 MUC3AQ02505 3323 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 TARM1B6A8C7 271 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 AQP9O43315 295 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 LRPAP1P30533 357 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 AVPR1AP37288 418 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 CSRP3P50461 194 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 TMBIM6P55061 237 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 MPP1Q00013 466 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 USP10Q14694 798 aaKnown RBP8.58□□□□□ -1.04
HPS4-206ENST00000439453 ZNF598Q86UK7 904 aaKnown RBP8.58□□□□□ -1.04
HPS4-206ENST00000439453 PYROXD2Q8N2H3 581 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 C12orf29Q8N999 325 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 CCNYQ8ND76 341 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 SLC9A7Q96T83 725 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 GPR22Q99680 433 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 NANOGQ9H9S0 305 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 AGPAT4Q9NRZ5 378 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 USP3Q9Y6I4 520 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 UBDO15205 165 aa8.58□□□□□ -1.04
HPS4-206ENST00000439453 NRP2O60462 931 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms