RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 THOP1P52888 689 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 YBX1P67809 324 aaKnown RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 ECT2LQ008S8 904 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 KLC1Q07866 573 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 NAB1Q13506 487 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 TRIP10Q15642 601 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 TRMT5Q32P41 509 aaKnown RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 TMEM240Q5SV17 173 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 KDELC1Q6UW63 502 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 LGI2Q8N0V4 545 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 SCML4Q8N228 414 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 KDM1BQ8NB78 822 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 ISL2Q96A47 359 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 ABHD8Q96I13 439 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 TRIM62Q9BVG3 475 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 PCDHAC1Q9H158 963 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 ARHGAP26Q9UNA1 814 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 VWA7Q9Y334 891 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 PCDHGC4Q9Y5F7 938 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 ABHD14A-ACY1A0A1B0GW23 586 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 A8MX80 341 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 UBFD1O14562 309 aaKnown RBP9.49□□□□□ -0.89
CUX1-206ENST00000437600 RAMP2O60895 175 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 RTN3O95197 1032 aaPredicted RBP9.49□□□□□ -0.89
CUX1-206ENST00000437600 SLC6A4P31645 630 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 SGSHP51688 502 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 GEN1Q17RS7 908 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 HECTD2Q5U5R9 776 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 POTEHQ6S545 545 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 SCIMPQ6UWF3 145 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 MFN1Q8IWA4 741 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 FBXW8Q8N3Y1 598 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 C2CD4AQ8NCU7 369 aaPredicted RBP9.49□□□□□ -0.89
CUX1-206ENST00000437600 RPL10LQ96L21 214 aaKnown RBP9.49□□□□□ -0.89
CUX1-206ENST00000437600 NSUN5Q96P11 429 aaKnown RBP9.49□□□□□ -0.89
CUX1-206ENST00000437600 KCNA7Q96RP8 456 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 SLC22A12Q96S37 553 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 ZNF184Q99676 751 aaPredicted RBP9.49□□□□□ -0.89
CUX1-206ENST00000437600 RNF38Q9H0F5 515 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 TRPC7Q9HCX4 862 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 S100A14Q9HCY8 104 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 IGSF5Q9NSI5 407 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 NCKIPSDQ9NZQ3 722 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 GALPQ9UBC7 116 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 RAD54BQ9Y620 910 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 COPG1Q9Y678 874 aaKnown RBP9.49□□□□□ -0.89
CUX1-206ENST00000437600 PLXNA4Q9HCM2 1894 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 FGF10O15520 208 aaPredicted RBP9.49□□□□□ -0.89
CUX1-206ENST00000437600 HOXA2O43364 376 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 DNAJA2O60884 412 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 MAGEA11P43364 429 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 SEMG2Q02383 582 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 RALGDSQ12967 914 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 CYLC2Q14093 348 aaPredicted RBP9.49□□□□□ -0.89
CUX1-206ENST00000437600 HNRNPDQ14103 355 aaKnown RBP9.49□□□□□ -0.89
CUX1-206ENST00000437600 GRAMD1BQ3KR37 738 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 FAM91A1Q658Y4 838 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 LMNTD2Q8IXW0 634 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 ARRDC2Q8TBH0 407 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 RMDN1Q96DB5 314 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 IMP4Q96G21 291 aaKnown RBP9.49□□□□□ -0.89
CUX1-206ENST00000437600 GCNAQ96QF7 691 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 SLC25A51Q9H1U9 297 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 C1orf21Q9H246 121 aa9.49□□□□□ -0.89
CUX1-206ENST00000437600 MRPL46Q9H2W6 279 aaKnown RBP9.49□□□□□ -0.89
CUX1-206ENST00000437600 NYNRINQ9P2P1 1898 aaKnown RBP9.49□□□□□ -0.89
CUX1-206ENST00000437600 CAPN8A6NHC0 703 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 PRRG1O14668 218 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 COCHO43405 550 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 GOT2P00505 430 aaKnown RBP9.48□□□□□ -0.89
CUX1-206ENST00000437600 PYGLP06737 847 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 GJA1P17302 382 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 SP100P23497 879 aaPredicted RBP9.48□□□□□ -0.89
CUX1-206ENST00000437600 AQP4P55087 323 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 FOXA1P55317 472 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 ROR2Q01974 943 aaKnown RBP9.48□□□□□ -0.89
CUX1-206ENST00000437600 ELAVL2Q12926 359 aaKnown RBP9.48□□□□□ -0.89
CUX1-206ENST00000437600 CDC16Q13042 620 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 LAMB3Q13751 1172 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 CEACAM7Q14002 265 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 FAM83EQ2M2I3 478 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 PGM2L1Q6PCE3 622 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 CILP2Q8IUL8 1156 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 LZTR1Q8N653 840 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 OR6K2Q8NGY2 324 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 SREK1Q8WXA9 508 aaKnown RBP9.48□□□□□ -0.89
CUX1-206ENST00000437600 PTERQ96BW5 349 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 LRCH3Q96II8 777 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 BTN2A3PQ96KV6 586 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 C3orf30Q96M34 536 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 CHCHD3Q9NX63 227 aaKnown RBP9.48□□□□□ -0.89
CUX1-206ENST00000437600 ADA2Q9NZK5 511 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.48□□□□□ -0.89
CUX1-206ENST00000437600 MYOCOSA0A1B0GUC4 107 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 RGSL1A5PLK6 1076 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 A8MT66 165 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 H7C4K7 107 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 CBX4O00257 560 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 LDB2O43679 373 aa9.48□□□□□ -0.89
CUX1-206ENST00000437600 PARNO95453 639 aaKnown RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms