RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 ZNF23P17027 643 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 CD86P42081 329 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 MGAT3Q09327 533 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 TRAP1Q12931 704 aaKnown RBP9.88□□□□□ -0.83
SS18-203ENST00000415083 CAPRIN1Q14444 709 aaKnown RBP9.88□□□□□ -0.83
SS18-203ENST00000415083 CYTH1Q15438 398 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 SIRPB2Q5JXA9 342 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 DUS1LQ6P1R4 473 aaKnown RBP9.88□□□□□ -0.83
SS18-203ENST00000415083 ELMSAN1Q6PJG2 1045 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 RTL3Q8N8U3 475 aaKnown RBP9.88□□□□□ -0.83
SS18-203ENST00000415083 ANKFN1Q8N957 763 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 TRPV1Q8NER1 839 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 OR52K2Q8NGK3 314 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 SLC10A4Q96EP9 437 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 SMOXQ9NWM0 555 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 RRN3Q9NYV6 651 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 LMCD1Q9NZU5 365 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 SLAMF8Q9P0V8 285 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 NEUROG3Q9Y4Z2 214 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 ASB1Q9Y576 335 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 A0A1W2PQH9 124 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 HEATR9A2RTY3 570 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 MRASO14807 208 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 MAGEB3O15480 346 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 ANXA9O76027 345 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 CYP11A1P05108 521 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 CES1P23141 567 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 PRDX3P30048 256 aaKnown RBP9.88□□□□□ -0.83
SS18-203ENST00000415083 ACAP2Q15057 778 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 PSMD5Q16401 504 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 UGP2Q16851 508 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 VPS26BQ4G0F5 336 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 GDF6Q6KF10 455 aaPredicted RBP9.88□□□□□ -0.83
SS18-203ENST00000415083 TFAP2DQ7Z6R9 452 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 SLC15A3Q8IY34 581 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 PTCD2Q8WV60 388 aaKnown RBP9.88□□□□□ -0.83
SS18-203ENST00000415083 IGSF8Q969P0 613 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 HDAC10Q969S8 669 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 EME1Q96AY2 570 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 SLC39A13Q96H72 371 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 ZFRQ96KR1 1074 aaKnown RBP9.88□□□□□ -0.83
SS18-203ENST00000415083 ANKRD60Q9BZ19 345 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 SPAG4Q9NPE6 437 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 DSEQ9UL01 958 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 CRYL1Q9Y2S2 319 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 A0A0J9YVX5 310 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 C17orf102A2RUQ5 167 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 H0YJX3 145 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 H6PDO95479 791 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 MOCS2O96007 188 aaPredicted RBP9.88□□□□□ -0.83
SS18-203ENST00000415083 DNAJB2P25686 324 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 GEMP55040 296 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 GALNT1Q10472 559 aaPredicted RBP9.88□□□□□ -0.83
SS18-203ENST00000415083 AAK1Q2M2I8 961 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 PPP4R4Q6NUP7 873 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 CIR1Q86X95 450 aaPredicted RBP9.88□□□□□ -0.83
SS18-203ENST00000415083 CMTR2Q8IYT2 770 aaKnown RBP9.88□□□□□ -0.83
SS18-203ENST00000415083 TSPAN14Q8NG11 270 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 TOP1MTQ969P6 601 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 ACBD6Q9BR61 282 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 ARMC1Q9NVT9 282 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 GALNT8Q9NY28 637 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 EBF1Q9UH73 591 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 EGFL7Q9UHF1 273 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 SLC45A1Q9Y2W3 748 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 VWA7Q9Y334 891 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 ARL5AQ9Y689 179 aa9.88□□□□□ -0.83
SS18-203ENST00000415083 TCRBV5S2A0A599 114 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 M0QZQ0 153 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 UBXN8O00124 270 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 PSMD3O43242 534 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 CTSHP09668 335 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 BMP2P12643 396 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 PSMC3P17980 439 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 FDXRP22570 491 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 HACD2Q6Y1H2 254 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 SPPL2CQ8IUH8 684 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 TTC9BQ8N6N2 239 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 SREK1Q8WXA9 508 aaKnown RBP9.87□□□□□ -0.83
SS18-203ENST00000415083 RNF34Q969K3 372 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 PSMG2Q969U7 264 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 C19orf60Q96EN9 201 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 ATOH8Q96SQ7 321 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 SLC30A3Q99726 388 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 SLC25A51Q9H1U9 297 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 SOX17Q9H6I2 414 aaPredicted RBP9.87□□□□□ -0.83
SS18-203ENST00000415083 IL1RL2Q9HB29 575 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 NT5MQ9NPB1 228 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 NDUFA13Q9P0J0 144 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 WASH4PA8MWX3 477 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 PIP5K1BO14986 540 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 FOXD2O60548 495 aaPredicted RBP9.87□□□□□ -0.83
SS18-203ENST00000415083 TBX18O95935 607 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 BMP1P13497 986 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 SLC6A2P23975 617 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 CTGFP29279 349 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 ETFBP38117 255 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 GRIA3P42263 894 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 STT3AP46977 705 aa9.87□□□□□ -0.83
SS18-203ENST00000415083 MLLT6P55198 1093 aaPredicted RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms