RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 CNTFP26441 200 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 CD86P42081 329 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 MAPK8P45983 427 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 NEK3P51956 506 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 AP1S1P61966 158 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 CCDC15Q0P6D6 951 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 IHHQ14623 411 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 RALGPS1Q5JS13 557 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 CGB2Q6NT52 195 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 MAMSTRQ6ZN01 415 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 SH2D5Q6ZV89 423 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 DSG4Q86SJ6 1040 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 PRPF39Q86UA1 669 aaKnown RBP13.48□□□□□ -0.25
LIMS1-204ENST00000409441 TMPRSS6Q8IU80 811 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 CAMK1DQ8IU85 385 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 MMAAQ8IVH4 418 aaKnown RBP13.48□□□□□ -0.25
LIMS1-204ENST00000409441 CTAGE3PQ8IX95 158 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 PPM1NQ8N819 430 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 SPATA22Q8NHS9 363 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 VOPP1Q96AW1 172 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 FCRL5Q96RD9 977 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 IER2Q9BTL4 223 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 RSPH9Q9H1X1 276 aaPredicted RBP13.48□□□□□ -0.25
LIMS1-204ENST00000409441 POLMQ9NP87 494 aaPredicted RBP13.48□□□□□ -0.25
LIMS1-204ENST00000409441 KLHL14Q9P2G3 628 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 PHTF1Q9UMS5 762 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 SLC12A4Q9UP95 1085 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 WASF2Q9Y6W5 498 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.47□□□□□ -0.25
LIMS1-204ENST00000409441 RNASEH1O60930 286 aaKnown RBP13.47□□□□□ -0.25
LIMS1-204ENST00000409441 LEFTY1O75610 366 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 IL1BP01584 269 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 MMP2P08253 660 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 SERPINF2P08697 491 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 CCNFP41002 786 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 CXCL12P48061 93 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 COPAP53621 1224 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 SATB1Q01826 763 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 PRPSAP1Q14558 356 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 GRM3Q14832 879 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 ZNF449Q6P9G9 518 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 FBXL6Q8N531 539 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 TMIEQ8NEW7 156 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 GRIN3AQ8TCU5 1115 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 TCP10LQ8TDR4 215 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 LRIG1Q96JA1 1093 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 TUBGCP5Q96RT8 1024 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 MKRN2Q9H000 416 aaKnown RBP13.47□□□□□ -0.25
LIMS1-204ENST00000409441 GBA3Q9H227 469 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 ATP13A3Q9H7F0 1226 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 FBRSQ9HAH7 460 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 MOCS1Q9NZB8 636 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 UBP1Q9NZI7 540 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 SARDHQ9UL12 918 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 GRID1Q9ULK0 1009 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 PCDHGC4Q9Y5F7 938 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 MAD1L1Q9Y6D9 718 aa13.47□□□□□ -0.25
LIMS1-204ENST00000409441 MUC22E2RYF6 1773 aaPredicted RBP13.46□□□□□ -0.25
LIMS1-204ENST00000409441 TCRBV21S2A2A0A5A6 115 aa13.46□□□□□ -0.25
LIMS1-204ENST00000409441 ERI2A8K979 691 aaKnown RBP13.46□□□□□ -0.25
LIMS1-204ENST00000409441 TRIM49D1C9J1S8 452 aa13.46□□□□□ -0.25
LIMS1-204ENST00000409441 ALDH1A2O94788 518 aa13.46□□□□□ -0.25
LIMS1-204ENST00000409441 MT-CYBP00156 380 aaPredicted RBP13.46□□□□□ -0.25
LIMS1-204ENST00000409441 PRNPP04156 253 aa13.46□□□□□ -0.25
LIMS1-204ENST00000409441 DHRS4L1P0CG22 281 aa13.46□□□□□ -0.25
LIMS1-204ENST00000409441 PSMB4P28070 264 aa13.46□□□□□ -0.25
LIMS1-204ENST00000409441 RPS14P62263 151 aaKnown RBP13.46□□□□□ -0.25
LIMS1-204ENST00000409441 BCL2L1Q07817 233 aa13.46□□□□□ -0.25
LIMS1-204ENST00000409441 DNAJC3Q13217 504 aa13.46□□□□□ -0.25
LIMS1-204ENST00000409441 GDPD4Q6W3E5 623 aa13.46□□□□□ -0.25
LIMS1-204ENST00000409441 MARK2Q7KZI7 788 aaKnown RBP13.46□□□□□ -0.25
LIMS1-204ENST00000409441 TMEM105Q8N8V8 129 aa13.46□□□□□ -0.25
LIMS1-204ENST00000409441 PIP4K2CQ8TBX8 421 aa13.46□□□□□ -0.25
LIMS1-204ENST00000409441 ZNF398Q8TD17 642 aa13.46□□□□□ -0.25
LIMS1-204ENST00000409441 ZNF75CPQ92670 426 aaPredicted RBP13.46□□□□□ -0.25
LIMS1-204ENST00000409441 OXNAD1Q96HP4 312 aaPredicted RBP13.46□□□□□ -0.25
LIMS1-204ENST00000409441 SERAC1Q96JX3 654 aa13.46□□□□□ -0.25
LIMS1-204ENST00000409441 MRGPRX1Q96LB2 322 aa13.46□□□□□ -0.25
LIMS1-204ENST00000409441 ZNF641Q96N77 438 aaPredicted RBP13.46□□□□□ -0.25
LIMS1-204ENST00000409441 SLC6A17Q9H1V8 727 aa13.46□□□□□ -0.25
LIMS1-204ENST00000409441 SUV39H2Q9H5I1 410 aa13.46□□□□□ -0.25
LIMS1-204ENST00000409441 SPATA6Q9NWH7 488 aaPredicted RBP13.46□□□□□ -0.25
LIMS1-204ENST00000409441 CXorf49A8MYA2 514 aaPredicted RBP13.46□□□□□ -0.26
LIMS1-204ENST00000409441 PMPCBO75439 489 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 ANXA9O76027 345 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 PIGNO95427 931 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 UGT2B4P06133 528 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 GABRG2P18507 467 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 PGAM1P18669 254 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 SERPINA4P29622 427 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 SLC8A1P32418 973 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 CCR3P51677 355 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 CST6Q15828 149 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 POM121L1PQ3SYA9 428 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 GALNTL6Q49A17 601 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 FAM46CQ5VWP2 391 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 ZNF776Q68DI1 518 aaPredicted RBP13.46□□□□□ -0.26
LIMS1-204ENST00000409441 TIFABQ6ZNK6 161 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 FAM47EQ6ZV65 393 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 MPP5Q8N3R9 675 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms