RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 NCEH1Q6PIU2 408 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 CCDC137Q6PK04 289 aaKnown RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 C4orf22Q6V702 233 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 B4GALNT4Q76KP1 1039 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 LYSMD3Q7Z3D4 306 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 PIP4P1Q86T03 277 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 SRLQ86TD4 932 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 PRPF39Q86UA1 669 aaKnown RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 ZNF354CQ86Y25 554 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 FAM71DQ8N9W8 422 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 GLIS1Q8NBF1 620 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 OR8D1Q8WZ84 308 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 KLK6Q92876 244 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 MAGOHBQ96A72 148 aaKnown RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 CAPZA3Q96KX2 299 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 CCDC114Q96M63 670 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 SLC6A18Q96N87 628 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 RUNDC3BQ96NL0 473 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 FCRL5Q96RD9 977 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 HEPHQ9BQS7 1158 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 CINPQ9BW66 212 aaPredicted RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 SLC25A51Q9H1U9 297 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 GBA3Q9H227 469 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 TNKS2Q9H2K2 1166 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 C10orf88Q9H8K7 445 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 EBF2Q9HAK2 575 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 GLOD4Q9HC38 313 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 PCDH9Q9HC56 1237 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 NT5MQ9NPB1 228 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 FBXL12Q9NXK8 326 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 DKK3Q9UBP4 350 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 FEZ2Q9UHY8 353 aaPredicted RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 CA5BQ9Y2D0 317 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 A0A1B0GTW7 788 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.25□□□□□ -0.93
VPS53-203ENST00000401468 INSIG1O15503 277 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 GJB3O75712 270 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 STK10O94804 968 aaKnown RBP9.25□□□□□ -0.93
VPS53-203ENST00000401468 PRLP01236 227 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 PRNPP04156 253 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 CEACAM1P13688 526 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 GNSP15586 552 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 MAGEA6P43360 314 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 KCNJ1P48048 391 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 PPP2CBP62714 309 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 PPP2CAP67775 309 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 SNX1Q13596 522 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 KIF19Q2TAC6 998 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 ACCSLQ4AC99 568 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 WDR45BQ5MNZ6 344 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 ATXN7L2Q5T6C5 722 aaPredicted RBP9.25□□□□□ -0.93
VPS53-203ENST00000401468 ZNF776Q68DI1 518 aaPredicted RBP9.25□□□□□ -0.93
VPS53-203ENST00000401468 KCTD11Q693B1 232 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 UNQ6494/PRO21346Q6UXR6 183 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 SYDE1Q6ZW31 735 aaPredicted RBP9.25□□□□□ -0.93
VPS53-203ENST00000401468 GATAD2AQ86YP4 633 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 NAXDQ8IW45 347 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 AADATQ8N5Z0 425 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 CHST14Q8NCH0 376 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 CEP76Q8TAP6 659 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 GRK7Q8WTQ7 553 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 ZNF641Q96N77 438 aaPredicted RBP9.25□□□□□ -0.93
VPS53-203ENST00000401468 PPP1R2P1Q96PQ5 205 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 TRIB3Q96RU7 358 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 FERMT1Q9BQL6 677 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 OSBPL1AQ9BXW6 950 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 TM6SF2Q9BZW4 377 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 NEUROG2Q9H2A3 272 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 PABPC3Q9H361 631 aaKnown RBP9.25□□□□□ -0.93
VPS53-203ENST00000401468 NOD2Q9HC29 1040 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 TM9SF3Q9HD45 589 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 IL36AQ9UHA7 158 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 SCML1Q9UN30 329 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 WASF3Q9UPY6 502 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 ZNF148Q9UQR1 794 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.25□□□□□ -0.93
VPS53-203ENST00000401468 PPIL1Q9Y3C6 166 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 CELSR3Q9NYQ7 3312 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 ITPR1Q14643 2758 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 KNTC1P50748 2209 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 LOC400499M0QZD8 3231 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 ACACAQ13085 2346 aa9.25□□□□□ -0.93
VPS53-203ENST00000401468 ARHGEF17Q96PE2 2063 aaPredicted RBP9.24□□□□□ -0.93
VPS53-203ENST00000401468 LOC285095A0A1B0GVY8 99 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 FAM149AA5PLN7 773 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 H0Y8X5 98 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 LEFTY1O75610 366 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 METTL18O95568 372 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 IL1BP01584 269 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 EPOP01588 193 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 WNT1P04628 370 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 IGHV4-34P06331 123 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 SYPP08247 313 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 NFKB1P19838 968 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 CSRP1P21291 193 aaKnown RBP9.24□□□□□ -0.93
VPS53-203ENST00000401468 ITGB7P26010 798 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 IVDP26440 423 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 SLC8A1P32418 973 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 RPL22P35268 128 aaKnown RBP9.24□□□□□ -0.93
VPS53-203ENST00000401468 ADRA1AP35348 466 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms