RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 INTS9Q9NV88 658 aaKnown RBP8.14□□□□□ -1.11
LIMS1-203ENST00000393310 NDFIP2Q9NV92 336 aa8.14□□□□□ -1.11
LIMS1-203ENST00000393310 INTS7Q9NVH2 962 aaKnown RBP8.14□□□□□ -1.11
LIMS1-203ENST00000393310 SLC27A6Q9Y2P4 619 aa8.14□□□□□ -1.11
LIMS1-203ENST00000393310 ATXN2Q99700 1313 aaKnown RBP8.14□□□□□ -1.11
LIMS1-203ENST00000393310 C15orf38-AP3S2A0A0A6YYH1 394 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 A0A1W2PRG6 482 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 MAGEA13PA6NCF6 341 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 NOS1APO75052 506 aaPredicted RBP8.13□□□□□ -1.11
LIMS1-203ENST00000393310 KRT1P04264 644 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 OCM2P0CE71 109 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 OCMP0CE72 109 aaPredicted RBP8.13□□□□□ -1.11
LIMS1-203ENST00000393310 HNRNPA2B1P22626 353 aaKnown RBP8.13□□□□□ -1.11
LIMS1-203ENST00000393310 NSFP46459 744 aaKnown RBP8.13□□□□□ -1.11
LIMS1-203ENST00000393310 SOX9P48436 509 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 NOVP48745 357 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 RGS7P49802 495 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 PGDP52209 483 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 YWHAGP61981 247 aaKnown RBP eCLIP8.13□□□□□ -1.11
LIMS1-203ENST00000393310 ELAVL3Q14576 367 aaKnown RBP8.13□□□□□ -1.11
LIMS1-203ENST00000393310 METTL11BQ5VVY1 283 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 POMZP3Q6PJE2 187 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 TTC7BQ86TV6 843 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 UBR7Q8N806 425 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 TRMT6Q9UJA5 497 aaKnown RBP8.13□□□□□ -1.11
LIMS1-203ENST00000393310 TSR3Q9UJK0 312 aaKnown RBP8.13□□□□□ -1.11
LIMS1-203ENST00000393310 EFR3BQ9Y2G0 817 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.13□□□□□ -1.11
LIMS1-203ENST00000393310 METTL12A8MUP2 240 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 NUDT19A8MXV4 375 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 PI15O43692 258 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 ABLIM3O94929 683 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 JUNDP17535 347 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 FOXM1Q08050 763 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 NR5A1Q13285 461 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 AARS2Q5JTZ9 985 aaKnown RBP8.13□□□□□ -1.11
LIMS1-203ENST00000393310 UNC13DQ70J99 1090 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 MAP4K3Q8IVH8 894 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 IGSF22Q8N9C0 903 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 SMG8Q8ND04 991 aaKnown RBP8.13□□□□□ -1.11
LIMS1-203ENST00000393310 CAPSLQ8WWF8 208 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 NELFBQ8WX92 580 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 IRGQQ8WZA9 623 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 WNT8BQ93098 351 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 MED8Q96G25 268 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 PCYT2Q99447 389 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 SHCBP1LQ9BZQ2 653 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 MYLK2Q9H1R3 596 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 KCNMB3Q9NPA1 279 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 CASS4Q9NQ75 786 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 GPR34Q9UPC5 381 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.13□□□□□ -1.11
LIMS1-203ENST00000393310 MYH13Q9UKX3 1938 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 SRRM3A6NNA2 597 aaPredicted RBP8.13□□□□□ -1.11
LIMS1-203ENST00000393310 TSPAN6O43657 245 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 CRYZL1O95825 349 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 ECDO95905 644 aaPredicted RBP8.13□□□□□ -1.11
LIMS1-203ENST00000393310 RPN2P04844 631 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 NPR3P17342 541 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 PCP4P48539 62 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 ACADVLP49748 655 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 TLR1Q15399 786 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 COL28A1Q2UY09 1125 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 INO80DQ53TQ3 878 aaPredicted RBP8.13□□□□□ -1.11
LIMS1-203ENST00000393310 TTMPQ5BVD1 217 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 LILRA6Q6PI73 481 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 PLPP6Q8IY26 295 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 SGF29Q96ES7 293 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 TUBGCP2Q9BSJ2 902 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 EHD3Q9NZN3 535 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 F5P12259 2224 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 ZNF318Q5VUA4 2279 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 SOWAHDA6NJG2 315 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 TRPC5OSA6NMA1 111 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 HAT1O14929 419 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 ZBTB14O43829 449 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 C6P13671 934 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 ZNF165P49910 485 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 DSG2Q14126 1118 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 HLA-BQ31612 363 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 SNAP47Q5SQN1 464 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 MARCH8Q5T0T0 291 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 HES3Q5TGS1 186 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 TRIM72Q6ZMU5 477 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 GPR141Q7Z602 305 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 IQCHQ86VS3 1027 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 CAMK1DQ8IU85 385 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 PHYKPLQ8IUZ5 450 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 CCDC28AQ8IWP9 274 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 ESX1Q8N693 406 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 CCDC197Q8NCU1 140 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 TEX47Q8TBZ9 253 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 SHC3Q92529 594 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 IFT43Q96FT9 208 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 HSFY1Q96LI6 401 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 SLC39A1Q9NY26 324 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 APOBEC3BQ9UH17 382 aaKnown RBP8.13□□□□□ -1.11
LIMS1-203ENST00000393310 ERVK-19Q9WJR5 959 aa8.13□□□□□ -1.11
LIMS1-203ENST00000393310 FAM25AB3EWG3 89 aa8.12□□□□□ -1.11
LIMS1-203ENST00000393310 FAM25CB3EWG5 89 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms