RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 FSBPO95073 299 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 ANPEPP15144 967 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 ALDH3A2P51648 485 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 SLC25A3Q00325 362 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 BEX3Q00994 111 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 RAVER1Q8IY67 606 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 CLP1Q92989 425 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 AP2M1Q96CW1 435 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 P2RX7Q99572 595 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 PSIP1O75475 530 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 SCGNO76038 276 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 GJB6O95452 261 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 AKT2P31751 481 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 PPM1AP35813 382 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 CCR3P51677 355 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 DPYSQ14117 519 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 NDUFA9Q16795 377 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 SULT1C3Q6IMI6 304 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 SLC35C1Q96A29 364 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 SNRNP25Q9BV90 132 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 TM6SF2Q9BZW4 377 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 SGK2Q9HBY8 427 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 ANKRD63C9JTQ0 380 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 TBC1D25Q3MII6 688 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 DCLRE1AQ6PJP8 1040 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 RIOX2Q8IUF8 465 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 GPC2Q8N158 579 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 KCNS3Q9BQ31 491 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 TLR10Q9BXR5 811 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 CASKO14936 926 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 ZSCAN5DPP0CG00 497 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 GSTT1P30711 240 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 MC4RP32245 332 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 ABATP80404 500 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 CPTPQ5TA50 214 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 ALKBH2Q6NS38 261 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 CPA6Q8N4T0 437 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 TRPV1Q8NER1 839 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 AIF1LQ9BQI0 150 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 GMIPQ9P107 970 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 ALOX5P09917 674 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 CDC25CP30307 473 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 UBAP2LQ14157 1087 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 KCNA10Q16322 511 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 CEP68Q76N32 757 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 ABCG4Q9H172 646 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 POLR3HQ9Y535 204 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 NCANO14594 1321 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 GRM6O15303 877 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 HOXC12P31275 282 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 CXCR3P49682 368 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 INHBEP58166 350 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 ZNF730Q6ZMV8 503 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 KCTD4Q8WVF5 259 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 TDRD1Q9BXT4 1180 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 KMOO15229 486 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 RSL1D1O76021 490 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 LRATO95237 230 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 LSM3P62310 102 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 FAM131AQ6UXB0 335 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 HOPXQ9BPY8 73 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 AARSD1Q9BTE6 412 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 COLEC10Q9Y6Z7 277 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 ITGA2BP08514 1039 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 CAPN13Q6MZZ7 669 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 UBE2R2Q712K3 238 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 GJD3Q8N144 294 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 CLIC5Q9NZA1 410 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 PLIN3O60664 434 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 SMU1Q2TAY7 513 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 C17orf64Q86WR6 236 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 TMA7Q9Y2S6 64 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 GATBO75879 557 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 UNC5CO95185 931 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 DHFRP00374 187 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 SDC2P34741 201 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 LARS2Q15031 903 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 PDK4Q16654 411 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 FCRL4Q96PJ5 515 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 CDH19Q9H159 772 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 TNKS2Q9H2K2 1166 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 MTRRQ9UBK8 725 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 BTNL10A8MVZ5 291 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 LOC110117498-PIK3R3F6TDL0 507 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 HDAC3O15379 428 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 SIN3BO75182 1162 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 CTPS1P17812 591 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 ABCG1P45844 678 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 CXCL9Q07325 125 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 FCHO2Q0JRZ9 810 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 SMARCB1Q12824 385 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 ZMYND11Q15326 602 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 TCEAL6Q6IPX3 200 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 FOXR1Q6PIV2 292 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 FAM151BQ6UXP7 276 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 GPR135Q8IZ08 494 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 TSEN15Q8WW01 171 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 RNF31Q96EP0 1072 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 MYO19Q96H55 970 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 ACE2Q9BYF1 805 aaPredicted RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms