RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 CXXC5Q7LFL8 322 aaKnown RBP13.73□□□□□ -0.21
COL4A1-201ENST00000375820 OTOP3Q7RTS5 596 aa13.73□□□□□ -0.21
COL4A1-201ENST00000375820 GPR180Q86V85 440 aa13.73□□□□□ -0.21
COL4A1-201ENST00000375820 CADM2Q8N3J6 435 aa13.73□□□□□ -0.21
COL4A1-201ENST00000375820 TSSK3Q96PN8 268 aa13.73□□□□□ -0.21
COL4A1-201ENST00000375820 C12orf65Q9H3J6 166 aaKnown RBP13.73□□□□□ -0.21
COL4A1-201ENST00000375820 MMADHCQ9H3L0 296 aaPredicted RBP13.73□□□□□ -0.21
COL4A1-201ENST00000375820 A8MUI8 341 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 CXCR2P25025 360 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 TIMM50Q3ZCQ8 353 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 PABPC1LQ4VXU2 614 aaKnown RBP13.72□□□□□ -0.21
COL4A1-201ENST00000375820 IRGCQ6NXR0 463 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 RAVER1Q8IY67 606 aaKnown RBP13.72□□□□□ -0.21
COL4A1-201ENST00000375820 UBE2J2Q8N2K1 259 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 SETD6Q8TBK2 473 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 SOCS4Q8WXH5 440 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 ALG2Q9H553 416 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 WDR55Q9H6Y2 383 aaPredicted RBP13.72□□□□□ -0.21
COL4A1-201ENST00000375820 IKZF2Q9UKS7 526 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 SPATA31A6Q5VVP1 1343 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 A0A1W2PRG6 482 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 RGSL1A5PLK6 1076 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 CASKO14936 926 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 CBX3Q13185 183 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 SF1Q15637 639 aaKnown RBP13.72□□□□□ -0.21
COL4A1-201ENST00000375820 LINGO4Q6UY18 593 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 PAGE2Q7Z2X7 111 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 SPPL2CQ8IUH8 684 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 CLIP4Q8N3C7 705 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 PJA1Q8NG27 643 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 PPP3R2Q96LZ3 170 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 PTPN18Q99952 460 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 NOL11Q9H8H0 719 aaKnown RBP13.72□□□□□ -0.21
COL4A1-201ENST00000375820 MAP4K5Q9Y4K4 846 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 USP31Q70CQ4 1352 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 CCL22O00626 93 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 TRIM38O00635 465 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 MPSTP25325 297 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 CLCN5P51795 746 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.72□□□□□ -0.21
COL4A1-201ENST00000375820 IQSEC1Q6DN90 963 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.72□□□□□ -0.21
COL4A1-201ENST00000375820 GHDCQ8N2G8 530 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 WDR18Q9BV38 432 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 ACE2Q9BYF1 805 aaPredicted RBP13.72□□□□□ -0.21
COL4A1-201ENST00000375820 ADGRE2Q9UHX3 823 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 MSRAQ9UJ68 235 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 ST3GAL5Q9UNP4 418 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 ASTN1O14525 1302 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 A0A1W2PQ67 120 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 RCCD1A6NED2 376 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 HAT1O14929 419 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 MBTD1Q05BQ5 628 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 HPS1Q92902 700 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 A0A1W2PQH9 124 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 MAGEC1O60732 1142 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 MATN4O95460 622 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 GABRR2P28476 465 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 IL18Q14116 193 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 CBX2Q14781 532 aaPredicted RBP13.72□□□□□ -0.21
COL4A1-201ENST00000375820 GFOD2Q3B7J2 385 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 TIGD2Q4W5G0 525 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 DENND5AQ6IQ26 1287 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 CLPTM1LQ96KA5 538 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 Q96MT0 163 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 MORF4L1Q9UBU8 362 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 RAB23Q9ULC3 237 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 ZNF490Q9ULM2 529 aaPredicted RBP13.72□□□□□ -0.21
COL4A1-201ENST00000375820 SSR3Q9UNL2 185 aa13.72□□□□□ -0.21
COL4A1-201ENST00000375820 ERBB2P04626 1255 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 GIMD1P0DJR0 217 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 MYBL2P10244 700 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 PSMD8P48556 350 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 TOP3AQ13472 1001 aaPredicted RBP13.71□□□□□ -0.21
COL4A1-201ENST00000375820 C9orf64Q5T6V5 341 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 FBXO42Q6P3S6 717 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 CEP68Q76N32 757 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 DHDDSQ86SQ9 333 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 C12orf50Q8NA57 414 aaPredicted RBP13.71□□□□□ -0.21
COL4A1-201ENST00000375820 C18orf25Q96B23 403 aaPredicted RBP13.71□□□□□ -0.21
COL4A1-201ENST00000375820 ITCHQ96J02 903 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 FUCA2Q9BTY2 467 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 CASP9P55211 416 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 UGCGQ16739 394 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 C1orf186Q6ZWK4 172 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 GSTCDQ8NEC7 633 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 SLC9A6Q92581 669 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 RNPEPL1Q9HAU8 725 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 TIMM22Q9Y584 194 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 DHRS12A0PJE2 317 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 ENPP3O14638 875 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 CXCL14O95715 111 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 OTCP00480 354 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 SLC7A2P52569 658 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 ITGB3BPQ13352 177 aaPredicted RBP13.71□□□□□ -0.21
COL4A1-201ENST00000375820 GRIK5Q16478 980 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 TMEM63BQ5T3F8 832 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 LIPMQ5VYY2 423 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 FAM91A1Q658Y4 838 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 TAPT1Q6NXT6 567 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms