RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 CTSAP10619 480 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 HSPA8P11142 646 aaKnown RBP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 HOXB6P17509 224 aaKnown RBP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 IBSPP21815 317 aaPredicted RBP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 RPS3P23396 243 aaKnown RBP eCLIP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 VHLP40337 213 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 MAPK9P45984 424 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 PSMD8P48556 350 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 PGFP49763 221 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 ZNF140P52738 457 aaPredicted RBP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 NAGLUP54802 743 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 ALDH18A1P54886 795 aaKnown RBP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 POLR2LP62875 67 aaKnown RBP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 PPARDQ03181 441 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 SLC34A1Q06495 639 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 CYLC2Q14093 348 aaPredicted RBP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 NAA25Q14CX7 972 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 CCDC6Q16204 474 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 PCSK7Q16549 785 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 SMU1Q2TAY7 513 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 IRAK1BP1Q5VVH5 260 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 NCEH1Q6PIU2 408 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 HACD2Q6Y1H2 254 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 PRR23BQ6ZRT6 265 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 RNF165Q6ZSG1 346 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 TRIM67Q6ZTA4 783 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 CHSY3Q70JA7 882 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 GLT6D1Q7Z4J2 308 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 GALNT13Q8IUC8 556 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 DENND1CQ8IV53 801 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 DENND6AQ8IWF6 608 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 TNS4Q8IZW8 715 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 PLD6Q8N2A8 252 aaKnown RBP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 KYQ8NBH2 561 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 GOLM1Q8NBJ4 401 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 FIBINQ8TAL6 211 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 PIP4K2CQ8TBX8 421 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 PHOSPHO2Q8TCD6 241 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 HCAR2Q8TDS4 363 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 AGAP11Q8TF27 550 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 GIPC2Q8TF65 315 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 HEXDCQ8WVB3 486 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 UTP4Q969X6 686 aaKnown RBP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 KIAA1191Q96A73 305 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 RMDN1Q96DB5 314 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 ZNF778Q96MU6 729 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 LYSMD1Q96S90 227 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 TRIM56Q9BRZ2 755 aaKnown RBP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 AARSD1Q9BTE6 412 aaKnown RBP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 NUSAP1Q9BXS6 441 aaKnown RBP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 SLC2A11Q9BYW1 496 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 C20orf27Q9GZN8 174 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 MUC3BQ9H195 1237 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 C12orf65Q9H3J6 166 aaKnown RBP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 MEAF6Q9HAF1 191 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 FBXO6Q9NRD1 293 aaPredicted RBP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 IGSF5Q9NSI5 407 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 SPATS2LQ9NUQ6 558 aaKnown RBP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 PIH1D1Q9NWS0 290 aaKnown RBP8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 TBC1D14Q9P2M4 693 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 EPS15L1Q9UBC2 864 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 XPR1Q9UBH6 696 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 NUDT5Q9UKK9 219 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 C15orf41Q9Y2V0 281 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 PPIL1Q9Y3C6 166 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 ZNF711Q9Y462 761 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 INSL6Q9Y581 213 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 INSL5Q9Y5Q6 135 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 VWA8A3KMH1 1905 aa8.72□□□□□ -1.01
SNRNP40-202ENST00000373720 TRAV19A0A0A6YYK7 116 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 GRXCR2A6NFK2 248 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 PRR5-ARHGAP8B1AHC4 643 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 QSOX1O00391 747 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 GIPC1O14908 333 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 STX7O15400 261 aaKnown RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ITM2AO43736 263 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 KLK8O60259 260 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 FZD6O60353 706 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 KERAO60938 352 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 PIGNO95427 931 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 GOT2P00505 430 aaKnown RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 LRG1P02750 347 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ENO1P06733 434 aaKnown RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 CBSLP0DN79 551 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 KITP10721 976 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 MBL2P11226 248 aaPredicted RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ACADSP16219 412 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ZNF37AP17032 561 aaPredicted RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ZNF7P17097 686 aaPredicted RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 HDCP19113 662 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 NCF2P19878 526 aaPredicted RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 WEE1P30291 646 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 SLC6A4P31645 630 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 CBSP35520 551 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 GJA8P48165 433 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 KCNQ1P51787 676 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 SMAD3P84022 425 aaKnown RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ARHGAP8P85298 464 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 CACNG1Q06432 222 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms