RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 RBM22Q9NW64 420 aaKnown RBP eCLIP21.72■■□□□ 1.07
CCDC28B-201ENST00000373602 GULP1Q9UBP9 304 aa21.72■■□□□ 1.07
CCDC28B-201ENST00000373602 GPR34Q9UPC5 381 aa21.72■■□□□ 1.07
CCDC28B-201ENST00000373602 COL27A1Q8IZC6 1860 aaPredicted RBP21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 PDE2AO00408 941 aaPredicted RBP21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 PDHA1P08559 390 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 EIF2S3P41091 472 aaKnown RBP21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 ETV3P41162 512 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 SLC10A2Q12908 348 aaPredicted RBP21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 ARHGEF7Q14155 803 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 IHHQ14623 411 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 PTPRRQ15256 657 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 TCEA2Q15560 299 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 DENND2CQ68D51 928 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 CRTC1Q6UUV9 634 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 TSPAN33Q86UF1 283 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 CNGA4Q8IV77 575 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 RHOT2Q8IXI1 618 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 NDUFAF2Q8N183 169 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 KYQ8NBH2 561 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 SNIP1Q8TAD8 396 aaKnown RBP21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 WDR48Q8TAF3 677 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 GRAMD1AQ96CP6 724 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 DCBLD2Q96PD2 775 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 MRPL40Q9NQ50 206 aaKnown RBP21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 SIRPGQ9P1W8 387 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 RP1P56715 2156 aa21.71■■□□□ 1.07
CCDC28B-201ENST00000373602 ZNF487B1APH4 448 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 USP12O75317 370 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 TCEA3O75764 348 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 MYCLP1P12525 358 aaPredicted RBP21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 CCNB1P14635 433 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 CTPS1P17812 591 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 ACTN2P35609 894 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 DSC2Q02487 901 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 TBX2Q13207 712 aaPredicted RBP21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 TBC1D25Q3MII6 688 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 Q6ZVL8 140 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 TECPR1Q7Z6L1 1165 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 ARRDC2Q8TBH0 407 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 LRRN4Q8WUT4 740 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 FGF11Q92914 225 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 HDAC11Q96DB2 347 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 CCDC3Q9BQI4 270 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 TEX101Q9BY14 249 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 PHPT1Q9NRX4 125 aaPredicted RBP21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 HAUS2Q9NVX0 235 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 DTLQ9NZJ0 730 aa21.7■■□□□ 1.06
CCDC28B-201ENST00000373602 ZFYVE26Q68DK2 2539 aa21.69■■□□□ 1.06
CCDC28B-201ENST00000373602 LRRD1A4D1F6 860 aa21.69■■□□□ 1.06
CCDC28B-201ENST00000373602 HLA-DQB2P05538 268 aa21.69■■□□□ 1.06
CCDC28B-201ENST00000373602 KRT10P13645 584 aa21.69■■□□□ 1.06
CCDC28B-201ENST00000373602 TEAD1P28347 426 aa21.69■■□□□ 1.06
CCDC28B-201ENST00000373602 LSSP48449 732 aa21.69■■□□□ 1.06
CCDC28B-201ENST00000373602 RBM44Q6ZP01 1051 aaKnown RBP21.69■■□□□ 1.06
CCDC28B-201ENST00000373602 PDZD3Q86UT5 571 aa21.69■■□□□ 1.06
CCDC28B-201ENST00000373602 HEATR4Q86WZ0 1026 aa21.69■■□□□ 1.06
CCDC28B-201ENST00000373602 VSIG1Q86XK7 387 aa21.69■■□□□ 1.06
CCDC28B-201ENST00000373602 CCDC13Q8IYE1 715 aa21.69■■□□□ 1.06
CCDC28B-201ENST00000373602 TDRD1Q9BXT4 1180 aaKnown RBP21.69■■□□□ 1.06
CCDC28B-201ENST00000373602 TMEM168Q9H0V1 697 aa21.69■■□□□ 1.06
CCDC28B-201ENST00000373602 CYP4F12Q9HCS2 524 aa21.69■■□□□ 1.06
CCDC28B-201ENST00000373602 INTUQ9ULD6 942 aa21.69■■□□□ 1.06
CCDC28B-201ENST00000373602 A0A0J9YYE9 177 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 PRSS38A1L453 326 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 C3orf70A6NLC5 250 aaPredicted RBP21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 AKR1B15C9JRZ8 316 aaPredicted RBP21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 DXOO77932 396 aaKnown RBP21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 TRBC1P01850 177 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 MPOP05164 745 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 GABREP78334 506 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 DPTQ07507 201 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 NIPAL4Q0D2K0 466 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 TCEAL1Q15170 157 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 LRRC38Q5VT99 294 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 LRRC66Q68CR7 880 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 OGFOD3Q6PK18 319 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 TAF8Q7Z7C8 310 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 LSMEM2Q8N112 164 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 PLD5Q8N7P1 536 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 CCNYQ8ND76 341 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 GPR156Q8NFN8 814 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 OR6C4Q8NGE1 309 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 ZNF830Q96NB3 372 aaPredicted RBP21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 SMIM14Q96QK8 99 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 POLR1BQ9H9Y6 1135 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 MOSPD1Q9UJG1 213 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 TTLL3Q9Y4R7 772 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 ENTPD2Q9Y5L3 495 aa21.68■■□□□ 1.06
CCDC28B-201ENST00000373602 A0A0U1RQS6 177 aa21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 NTN3O00634 580 aaPredicted RBP21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 CASC3O15234 703 aaKnown RBP21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 PRLP01236 227 aa21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 CEACAM5P06731 702 aa21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 ZNF30P17039 623 aa21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 ABCG1P45844 678 aa21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 CDK3Q00526 305 aa21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 PPIDQ08752 370 aaKnown RBP21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 SLC9A4Q6AI14 798 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms