RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ZNF711Q9Y462 761 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 A0A0J9YYE9 177 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 ANKRD65E5RJM6 399 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 TNRC18O15417 2968 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-202ENST00000372405 SNNO75324 88 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-202ENST00000372405 WISP3O95389 354 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-202ENST00000372405 IL1BP01584 269 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 TRBC1P01850 177 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 NEFHP12036 1026 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 ARSAP15289 507 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 OGNP20774 298 aaKnown RBP13.79□□□□□ -0.2
PTPRF-202ENST00000372405 FCARP24071 287 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 MAPK8P45983 427 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 STC1P52823 247 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 EPHB1P54762 984 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 CDKN2DP55273 166 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 SNRPD1P62314 119 aaKnown RBP13.79□□□□□ -0.2
PTPRF-202ENST00000372405 OCRLQ01968 901 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 PEX6Q13608 980 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 DMC1Q14565 340 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 CDKN3Q16667 212 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 SPRED3Q2MJR0 410 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 GAB4Q2WGN9 574 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 MYLK3Q32MK0 819 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 CCDC153Q494R4 210 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 HECTD2Q5U5R9 776 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 ATG14Q6ZNE5 492 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 DPY19L3Q6ZPD9 716 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 GET4Q7L5D6 327 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-202ENST00000372405 C10orf107Q8IVU9 208 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 PIANPQ8IYJ0 282 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 RYBPQ8N488 228 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-202ENST00000372405 SPATA6LQ8N4H0 392 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 GABPB2Q8TAK5 448 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-202ENST00000372405 CYB5D2Q8WUJ1 264 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 MRGPRX3Q96LB0 322 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 RMDN2Q96LZ7 410 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 SLC2A11Q9BYW1 496 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 ATP13A3Q9H7F0 1226 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 NMRAL1Q9HBL8 299 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 HACD3Q9P035 362 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 IL17CQ9P0M4 197 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 HECAQ9UBI9 543 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-202ENST00000372405 SLC25A13Q9UJS0 675 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 TLK1Q9UKI8 766 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 ACOT9Q9Y305 439 aa13.79□□□□□ -0.2
PTPRF-202ENST00000372405 HOXC11O43248 304 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-202ENST00000372405 BNIP3LO60238 219 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 ADH5P11766 374 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 CRABP2P29373 138 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 ARRB2P32121 409 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 CCNHP51946 323 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-202ENST00000372405 RPL26P61254 145 aaKnown RBP13.78□□□□□ -0.2
PTPRF-202ENST00000372405 SULT2A1Q06520 285 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 ACCSLQ4AC99 568 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 TAF1BQ53T94 588 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-202ENST00000372405 COL13A1Q5TAT6 717 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-202ENST00000372405 MRNIPQ6NTE8 343 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 AFTPHQ6ULP2 937 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 TMEM207Q6UWW9 146 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 TMEM184AQ6ZMB5 413 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 Q6ZVU0 165 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 AHI1Q8N157 1196 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 ANKS4BQ8N8V4 417 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 ZNF557Q8N988 423 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-202ENST00000372405 CHST14Q8NCH0 376 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 OR6Y1Q8NGX8 325 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 BPIFB1Q8TDL5 484 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 FRS2Q8WU20 508 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 C10orf82Q8WW14 230 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 NXNL1Q96CM4 212 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 ECHDC3Q96DC8 303 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 CEP44Q9C0F1 390 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 ABCF3Q9NUQ8 709 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 RPL26L1Q9UNX3 145 aaKnown RBP13.78□□□□□ -0.2
PTPRF-202ENST00000372405 ERVW-1Q9UQF0 538 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 ARL2BPQ9Y2Y0 163 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-202ENST00000372405 TARM1B6A8C7 271 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 H7C0S8 307 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 TK2O00142 265 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 GPR39O43194 453 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 COL6A2P12110 1019 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 CPA3P15088 417 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 SERPINA4P29622 427 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 HNF1BP35680 557 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 HMGCLP35914 325 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 GLRBP48167 497 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 XIAPP98170 497 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 DBN1Q16643 649 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 CARD16Q5EG05 197 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 PSAPL1Q6NUJ1 521 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 TRIM42Q8IWZ5 723 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 ETFBKMTQ8IXQ9 262 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 PCDH20Q8N6Y1 951 aaKnown RBP13.78□□□□□ -0.2
PTPRF-202ENST00000372405 KIAA1958Q8N8K9 716 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 OR2A12Q8NGT7 310 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 RFWD2Q8NHY2 731 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 RAB3IL1Q8TBN0 382 aa13.78□□□□□ -0.2
PTPRF-202ENST00000372405 CCT6BQ92526 530 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms