RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 ATG13O75143 517 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 SIN3BO75182 1162 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 GATBO75879 557 aaKnown RBP6.47□□□□□ -1.37
UPF2-201ENST00000356352 RGS20O76081 388 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 CBX6O95503 412 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 GLUD1P00367 558 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 COL6A2P12110 1019 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 MC4RP32245 332 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 IFI35P80217 286 aaPredicted RBP6.47□□□□□ -1.37
UPF2-201ENST00000356352 MAP2K5Q13163 448 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 LARS2Q15031 903 aaKnown RBP6.47□□□□□ -1.37
UPF2-201ENST00000356352 PDK4Q16654 411 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 RTL4Q6ZR62 310 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 KBTBD7Q8WVZ9 684 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 PIH1D2Q8WWB5 315 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 LINGO1Q96FE5 620 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 DUSP16Q9BY84 665 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 GRIP2Q9C0E4 1043 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 CDH19Q9H159 772 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 RNPEPL1Q9HAU8 725 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 HMGXB4Q9UGU5 601 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 ASF1AQ9Y294 204 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 DIP2BQ9P265 1576 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 SH3BGRLO75368 114 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 SLC22A3O75751 556 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 OR5F1O95221 314 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 PGK1P00558 417 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 ITGA2BP08514 1039 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 ZNF37AP17032 561 aaPredicted RBP6.47□□□□□ -1.37
UPF2-201ENST00000356352 DRG2P55039 364 aaKnown RBP6.47□□□□□ -1.37
UPF2-201ENST00000356352 ABRQ12979 859 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 RIPK1Q13546 671 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 TBC1D25Q3MII6 688 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 CPTPQ5TA50 214 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 BBS12Q6ZW61 710 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 STX12Q86Y82 276 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 FAM71AQ8IYT1 594 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 MREGQ8N565 214 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 RNF148Q8N7C7 305 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 METTL21AQ8WXB1 218 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 CLIP3Q96DZ5 547 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 MTMR9Q96QG7 549 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 OR52E6Q96RD3 313 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 DUSP9Q99956 384 aaKnown RBP6.47□□□□□ -1.37
UPF2-201ENST00000356352 KCNS3Q9BQ31 491 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 CHCHD6Q9BRQ6 235 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 RTKNQ9BST9 563 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 KCNMB3Q9NPA1 279 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 IL17RBQ9NRM6 502 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 UBIAD1Q9Y5Z9 338 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 COMMD3-BMI1R4GMX3 469 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 BCORL1Q5H9F3 1711 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 VWDEQ8N2E2 1590 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 A0A1W2PRG6 482 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 DHRS12A0PJE2 317 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 USP12O75317 370 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 SEMA3DO95025 777 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 UNC5CO95185 931 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 SLC25A14O95258 325 aaPredicted RBP6.47□□□□□ -1.37
UPF2-201ENST00000356352 HOXC12P31275 282 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 MANFP55145 182 aaKnown RBP6.47□□□□□ -1.37
UPF2-201ENST00000356352 MBTD1Q05BQ5 628 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 PDK3Q15120 406 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 OLFML2AQ68BL7 652 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 TCEAL6Q6IPX3 200 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 ZCCHC12Q6PEW1 402 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 CRELD2Q6UXH1 353 aaPredicted RBP6.47□□□□□ -1.37
UPF2-201ENST00000356352 ZNF662Q6ZS27 426 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 UBE2R2Q712K3 238 aaPredicted RBP6.47□□□□□ -1.37
UPF2-201ENST00000356352 PIGZQ86VD9 579 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 MON1AQ86VX9 555 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 CACUL1Q86Y37 369 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 TBC1D21Q8IYX1 336 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 TRPV1Q8NER1 839 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 SPPL2BQ8TCT7 592 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 PYDC1Q8WXC3 89 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 RAD51AP1Q96B01 352 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 CLIC5Q9NZA1 410 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 CALML5Q9NZT1 146 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 MCM8Q9UJA3 840 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 DHRS7Q9Y394 339 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 hCG_1818297A0A087WSY0 165 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 ARHGEF33A8MVX0 844 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 G3V2T6 193 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 FFAR3O14843 346 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 GPR42O15529 346 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 RPP40O75818 363 aaKnown RBP6.47□□□□□ -1.37
UPF2-201ENST00000356352 PSMD10O75832 226 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 NFATC1O95644 943 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 MNDAP41218 407 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 PTPN9P43378 593 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 RPS6KA3P51812 740 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 NAGLUP54802 743 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 AP1S2P56377 157 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 ELF3P78545 371 aaPredicted RBP6.47□□□□□ -1.37
UPF2-201ENST00000356352 BEX3Q00994 111 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 NRF1Q16656 503 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 XKR4Q5GH76 650 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 PIK3R6Q5UE93 754 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 LCN1P1Q5VSP4 162 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms