RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 PDK4Q16654 411 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 STXBP5Q5T5C0 1151 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 IZUMO3Q5VZ72 239 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 UBE2R2Q712K3 238 aaPredicted RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 MARK2Q7KZI7 788 aaKnown RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 APBB1IPQ7Z5R6 666 aaPredicted RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 MILR1Q7Z6M3 343 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 TADA2BQ86TJ2 420 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 TMC8Q8IU68 726 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 PHYKPLQ8IUZ5 450 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 HERC6Q8IVU3 1022 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 BCL6BQ8N143 479 aaPredicted RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 ZBTB34Q8NCN2 500 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 NUP43Q8NFH3 380 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 SCAMP5Q8TAC9 235 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 FAM172AQ8WUF8 416 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 SOCS4Q8WXH5 440 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 CASP10Q92851 521 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 KRTAP4-11Q9BYQ6 195 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 SLC13A1Q9BZW2 595 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 SMOC2Q9H3U7 446 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 DEF6Q9H4E7 631 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 SLC6A20Q9NP91 592 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 SLCO1B3Q9NPD5 702 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 VPS45Q9NRW7 570 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 MBNL3Q9NUK0 354 aaKnown RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 GOLGA6AQ9NYA3 693 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 KCNG1Q9UIX4 513 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ACSL6Q9UKU0 697 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 GIT1Q9Y2X7 761 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 PCDHGB6Q9Y5F9 930 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 TRPV2Q9Y5S1 764 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 CROCCQ5TZA2 2017 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 CCDC88CQ9P219 2028 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 A0A1B0GTL3 188 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 LOC285095A0A1B0GVY8 99 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 C17orf102A2RUQ5 167 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 A8MUI8 341 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 PALM2-AKAP2B1ALY0 433 aaPredicted RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 CST8O60676 142 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ZMPSTE24O75844 475 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 CYP2C9P11712 490 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 CYP2F1P24903 491 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 MCM3P25205 808 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 HOXD9P28356 352 aaPredicted RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 CD52P31358 61 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 DPP6P42658 865 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 KCNC1P48547 511 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 FLT3LGP49771 235 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 SUOXP51687 545 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 EIF3BP55884 814 aaKnown RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 PSMC1P62191 440 aaKnown RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 RPL11P62913 178 aaKnown RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 TFAMQ00059 246 aaKnown RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 CDK18Q07002 472 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 SEMA3AQ14563 771 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ITIH4Q14624 930 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 TRIP13Q15645 432 aaPredicted RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 UGT3A2Q3SY77 523 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 CCDC38Q502W7 563 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 SLC45A4Q5BKX6 768 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 TEDDM1Q5T9Z0 273 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 WDR78Q5VTH9 848 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 STEAP3Q658P3 488 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 LRRC8BQ6P9F7 803 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 CXCL17Q6UXB2 119 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 RANBP10Q6VN20 620 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 LIPIQ6XZB0 460 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 OTOAQ7RTW8 1153 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 GPR155Q7Z3F1 870 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 MAATS1Q7Z4T9 603 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 GALNT7Q86SF2 657 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 TAC4Q86UU9 113 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 PALM2Q8IXS6 379 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 PELI3Q8N2H9 469 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 EFHBQ8N7U6 833 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 RFWD2Q8NHY2 731 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 NRG4Q8WWG1 115 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 IFT81Q8WYA0 676 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ANKRD36BP1Q96IX9 119 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 MAELQ96JY0 434 aaKnown RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 HRASLS5Q96KN8 279 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 RUNDC3BQ96NL0 473 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ALPK1Q96QP1 1244 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 LGMNQ99538 433 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ACBD6Q9BR61 282 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 BOCQ9BWV1 1114 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ZDHHC5Q9C0B5 715 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 MRPL47Q9HD33 250 aaKnown RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 STAU2Q9NUL3 570 aaKnown RBP eCLIP2.35□□□□□ -2.03
VPS54-202ENST00000354504 RIC8BQ9NVN3 520 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 WDR35Q9P2L0 1181 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ZNF225Q9UK10 706 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 TBX21Q9UL17 535 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 THADAQ6YHU6 1953 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ADAMTS9Q9P2N4 1935 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 KMT2EQ8IZD2 1858 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 TMEM120BA0PK00 339 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 NUDT19A8MXV4 375 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 KBTBD13C9JR72 458 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms