RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ADA2Q9NZK5 511 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 PCDHB7Q9Y5E2 793 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 SMIM24O75264 130 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 PENKP01210 267 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-202ENST00000352886 VCLP18206 1134 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 CDH13P55290 713 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 HERVK_113P63132 956 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 NFKB2Q00653 900 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 BTG3Q14201 252 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-202ENST00000352886 AGKQ53H12 422 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 UNC50Q53HI1 259 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 IL31Q6EBC2 164 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 ZFP1Q6P2D0 407 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 ICA1LQ8NDH6 482 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 OR7D4Q8NG98 312 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 CASD1Q96PB1 797 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 ERVK-6Q9BXR3 956 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 UTP6Q9NYH9 597 aaKnown RBP21.79■■□□□ 1.08
SHMT1-202ENST00000352886 DTNAQ9Y4J8 743 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 PCDHGA7Q9Y5G6 932 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 ATP6AP2A0A1C7CYW4 349 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 CAPN8A6NHC0 703 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 ATP6AP2O75787 350 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 BCAS2O75934 225 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-202ENST00000352886 COL6A1P12109 1028 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 ZNF37AP17032 561 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-202ENST00000352886 HDCP19113 662 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 HOXD9P28356 352 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-202ENST00000352886 KPNA1P52294 538 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-202ENST00000352886 STX5Q13190 355 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 PDAP1Q13442 181 aaKnown RBP21.79■■□□□ 1.08
SHMT1-202ENST00000352886 MAPRE2Q15555 327 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 CYHR1Q6ZMK1 362 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 LRRC8DQ7L1W4 858 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 SNX31Q8N9S9 440 aa21.79■■□□□ 1.08
SHMT1-202ENST00000352886 ACOT8O14734 319 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 PRSS56P0CW18 603 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 ATF6P18850 670 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 PMLP29590 882 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 PSME3P61289 254 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 GNA12Q03113 381 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 LRGUKQ96M69 825 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 ZNF599Q96NL3 588 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 STARD7Q9NQZ5 370 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 ANKRD36A6QL64 1941 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 A0A1W2PQ45 241 aaPredicted RBP21.78■■□□□ 1.08
SHMT1-202ENST00000352886 A0A1W2PQY0 241 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 SLC38A8A6NNN8 435 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 ENPP3O14638 875 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 KIF3CO14782 793 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 STC1P52823 247 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 FOXB2Q5VYV0 432 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 REP15Q6BDI9 236 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 ALG1LQ6GMV1 187 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 PTGR2Q8N8N7 351 aaPredicted RBP21.78■■□□□ 1.08
SHMT1-202ENST00000352886 GCNAQ96QF7 691 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 MGME1Q9BQP7 344 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 COMMD8Q9NX08 183 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 CACNA2D2Q9NY47 1150 aa21.78■■□□□ 1.08
SHMT1-202ENST00000352886 ZFP37Q9Y6Q3 630 aaPredicted RBP21.78■■□□□ 1.08
SHMT1-202ENST00000352886 TRIM38O00635 465 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 FBP2O00757 339 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 TXNDC9O14530 226 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 TBC1D4O60343 1298 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 NDST3O95803 873 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 ALDH1A1P00352 501 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 HOXB8P17481 243 aaPredicted RBP21.77■■□□□ 1.08
SHMT1-202ENST00000352886 OGNP20774 298 aaKnown RBP21.77■■□□□ 1.08
SHMT1-202ENST00000352886 CCNHP51946 323 aaPredicted RBP21.77■■□□□ 1.08
SHMT1-202ENST00000352886 SP3Q02447 781 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 LRP8Q14114 963 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 OR4D1Q15615 310 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 TMEM173Q86WV6 379 aaPredicted RBP21.77■■□□□ 1.08
SHMT1-202ENST00000352886 BBS5Q8N3I7 341 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 DBF4BQ8NFT6 615 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 DLG3Q92796 817 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 KLHL32Q96NJ5 620 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 TRIB3Q96RU7 358 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 SPON2Q9BUD6 331 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 COPS7BQ9H9Q2 264 aaPredicted RBP21.77■■□□□ 1.08
SHMT1-202ENST00000352886 UBXN8O00124 270 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 ACSL4O60488 711 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 SIX3O95343 332 aaPredicted RBP21.77■■□□□ 1.08
SHMT1-202ENST00000352886 SUOXP51687 545 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 SH3BP2P78314 561 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 ADGRE1Q14246 886 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 C11orf91Q3C1V1 193 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 RARS2Q5T160 578 aaKnown RBP21.77■■□□□ 1.08
SHMT1-202ENST00000352886 PRSS55Q6UWB4 352 aaPredicted RBP21.77■■□□□ 1.08
SHMT1-202ENST00000352886 LARP4Q71RC2 724 aaKnown RBP eCLIP21.77■■□□□ 1.08
SHMT1-202ENST00000352886 TAS1R1Q7RTX1 841 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 C19orf60Q96EN9 201 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 DCUN1D1Q96GG9 259 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 CDKN2AIPNLQ96HQ2 116 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 EXOC2Q96KP1 924 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 BTBD9Q96Q07 612 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 MAGEH1Q9H213 219 aa21.77■■□□□ 1.08
SHMT1-202ENST00000352886 ELAC1Q9H777 363 aaKnown RBP21.77■■□□□ 1.08
SHMT1-202ENST00000352886 SPATS2LQ9NUQ6 558 aaKnown RBP21.77■■□□□ 1.08
SHMT1-202ENST00000352886 RIMS3Q9UJD0 308 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms