RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 XAB2Q9HCS7 855 aaKnown RBP9.22□□□□□ -0.93
USP4-202ENST00000351842 VPS45Q9NRW7 570 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 SUN2Q9UH99 717 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 PKP3Q9Y446 797 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 IKBKGQ9Y6K9 419 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 DMXL1Q9Y485 3027 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 CXorf49A8MYA2 514 aaPredicted RBP9.22□□□□□ -0.93
USP4-202ENST00000351842 AXIN1O15169 862 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 ASMTLO95671 621 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 PCCBP05166 539 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 ADRB3P13945 408 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 LIG3P49916 1009 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 DMWDQ09019 674 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 THOC5Q13769 683 aaKnown RBP9.22□□□□□ -0.93
USP4-202ENST00000351842 COL9A2Q14055 689 aaPredicted RBP9.22□□□□□ -0.93
USP4-202ENST00000351842 CASP8Q14790 479 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 SLMAPQ14BN4 828 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 KRT71Q3SY84 523 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 KCTD11Q693B1 232 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 LINC00523Q86TU6 105 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 RASSF3Q86WH2 238 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.22□□□□□ -0.93
USP4-202ENST00000351842 NDNQ99608 321 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 FBXO6Q9NRD1 293 aaPredicted RBP9.22□□□□□ -0.93
USP4-202ENST00000351842 ZFATQ9P243 1243 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 C2orf81A6NN90 581 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 H3BQF6 201 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 K7ESM1 405 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 DCXO43602 365 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 DNAJC6O75061 913 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 PAPLNO95428 1278 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 TIMP2P16035 220 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 PBLDP30039 288 aaPredicted RBP9.22□□□□□ -0.93
USP4-202ENST00000351842 CLDN2P57739 230 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 MPP1Q00013 466 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 TMED2Q15363 201 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 ZNF542PQ5EBM4 170 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 ERAP2Q6P179 960 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 LRRC8BQ6P9F7 803 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 RGL4Q8IZJ4 473 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 PELI3Q8N2H9 469 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 CLDN19Q8N6F1 224 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 PIH1D2Q8WWB5 315 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 EID2BQ96D98 161 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 SIGLEC10Q96LC7 697 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 EPHX3Q9H6B9 360 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 PRKAG3Q9UGI9 489 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 ZNF711Q9Y462 761 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 PSAT1Q9Y617 370 aa9.22□□□□□ -0.93
USP4-202ENST00000351842 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 A0A0J9YYE9 177 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.21□□□□□ -0.93
USP4-202ENST00000351842 TCRBV9S1A1TA0A576 114 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 UPK3BL1B0FP48 263 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 UPK3BL2E5RIL1 263 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 H0Y8X5 98 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 TRBC1P01850 177 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 FGF1P05230 155 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 POLBP06746 335 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 GABRG2P18507 467 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 AKT1P31749 480 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 HSPA9P38646 679 aaKnown RBP9.21□□□□□ -0.93
USP4-202ENST00000351842 EIF2DP41214 584 aaKnown RBP9.21□□□□□ -0.93
USP4-202ENST00000351842 IRX4P78413 519 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 NSUN2Q08J23 767 aaKnown RBP eCLIP9.21□□□□□ -0.93
USP4-202ENST00000351842 CRYMQ14894 314 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 MROH9Q5TGP6 573 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 ZNF776Q68DI1 518 aaPredicted RBP9.21□□□□□ -0.93
USP4-202ENST00000351842 CRTC1Q6UUV9 634 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 ERN2Q76MJ5 926 aaKnown RBP9.21□□□□□ -0.93
USP4-202ENST00000351842 HSD11B1LQ7Z5J1 315 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 TMEFF1Q8IYR6 380 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 SPATA6LQ8N4H0 392 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 GPATCH11Q8N954 259 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 FEM1CQ96JP0 617 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 SLC2A4RGQ9NR83 387 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 WNT16Q9UBV4 365 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 PPM1HQ9ULR3 514 aa9.21□□□□□ -0.93
USP4-202ENST00000351842 DENND4AQ7Z401 1863 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 CEP250Q9BV73 2442 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 HLA-DPA1P20036 260 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 TPSB2P20231 275 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 MCM3P25205 808 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 MC4RP32245 332 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 GPX6P59796 221 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 ZNF33AQ06730 810 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 TPSAB1Q15661 275 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 CCDC6Q16204 474 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 TTC31Q49AM3 519 aaPredicted RBP9.21□□□□□ -0.94
USP4-202ENST00000351842 EOGTQ5NDL2 527 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 RAET1GQ6H3X3 334 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 GOLGA6L1Q8N7Z2 621 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 PJA1Q8NG27 643 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 OR2T3Q8NH03 318 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 AENQ8WTP8 325 aaKnown RBP9.21□□□□□ -0.94
USP4-202ENST00000351842 SKA2Q8WVK7 121 aaPredicted RBP9.21□□□□□ -0.94
USP4-202ENST00000351842 EBNA1BP2Q99848 306 aaKnown RBP9.21□□□□□ -0.94
USP4-202ENST00000351842 MLXIPLQ9NP71 852 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 MARCH4Q9P2E8 410 aaPredicted RBP9.21□□□□□ -0.94
USP4-202ENST00000351842 OR1A2Q9Y585 309 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms