RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 SQORQ9Y6N5 450 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 MYOFQ9NZM1 2061 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 SUPT3HB4E1H0 165 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 UBXN8O00124 270 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 SUPT3HO75486 399 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 CRCPO75575 148 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 CASP2P42575 452 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 RHOAP61586 193 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 INSCQ1MX18 579 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 RABGAP1LQ5R372 815 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 ZYG11AQ6WRX3 759 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 ACAD11Q709F0 780 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 PCDH20Q8N6Y1 951 aaKnown RBP13.92□□□□□ -0.18
TRIM4-201ENST00000349062 DPF3Q92784 378 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 NPAS2Q99743 824 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 FKBPLQ9UIM3 349 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 CPQQ9Y646 472 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 SLC4A7Q9Y6M7 1214 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 TSC2P49815 1807 aa13.92□□□□□ -0.18
TRIM4-201ENST00000349062 KLHL2O95198 593 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 AP2B1P63010 937 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 ECT2LQ008S8 904 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 PLIN5Q00G26 463 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 BTKQ06187 659 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 IL10RBQ08334 325 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 MRPL58Q14197 206 aaKnown RBP13.91□□□□□ -0.18
TRIM4-201ENST00000349062 SMYD5Q6GMV2 418 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 CAMK1DQ8IU85 385 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 CILP2Q8IUL8 1156 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 HS6ST3Q8IZP7 471 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 WFDC5Q8TCV5 224 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 EBF3Q9H4W6 596 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 TREX1Q9NSU2 369 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 BTRCQ9Y297 605 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 GON4LQ3T8J9 2241 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 TMEM189-UBE2V1I3L0A0 370 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 PRAMEF11O60813 436 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 APLP1P51693 650 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 PTPRNQ16849 979 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 CNPY1Q3B7I2 92 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 MMEL1Q495T6 779 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 AGAP9Q5VTM2 703 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 C2CD4AQ8NCU7 369 aaPredicted RBP13.91□□□□□ -0.18
TRIM4-201ENST00000349062 ABTB1Q969K4 478 aaPredicted RBP13.91□□□□□ -0.18
TRIM4-201ENST00000349062 PAWRQ96IZ0 340 aaKnown RBP13.91□□□□□ -0.18
TRIM4-201ENST00000349062 NSUN5Q96P11 429 aaKnown RBP13.91□□□□□ -0.18
TRIM4-201ENST00000349062 FBRSL1Q9HCM7 1045 aaKnown RBP13.91□□□□□ -0.18
TRIM4-201ENST00000349062 SEMA4BQ9NPR2 832 aaPredicted RBP13.91□□□□□ -0.18
TRIM4-201ENST00000349062 MKS1Q9NXB0 559 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 CDYLQ9Y232 598 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 RAI2Q9Y5P3 530 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 XIRP2A4UGR9 3374 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 A0A1W2PRU2 124 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 AP3B1O00203 1094 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 INSIG1O15503 277 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 LDB2O43679 373 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 HOXC13P31276 330 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 KLF10Q13118 480 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 KIAA0930Q6ICG6 404 aaPredicted RBP13.91□□□□□ -0.18
TRIM4-201ENST00000349062 TMEM207Q6UWW9 146 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 ZNF683Q8IZ20 524 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 ZNF461Q8TAF7 563 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 RCN3Q96D15 328 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 KCNA7Q96RP8 456 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 CORO1BQ9BR76 489 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 TUBB6Q9BUF5 446 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 C1QTNF1Q9BXJ1 281 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 GPR63Q9BZJ6 419 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 CATSPERZQ9NTU4 200 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 NSMCE4AQ9NXX6 385 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 SEPT3Q9UH03 358 aa13.91□□□□□ -0.18
TRIM4-201ENST00000349062 EVLQ9UI08 416 aaPredicted RBP13.91□□□□□ -0.18
TRIM4-201ENST00000349062 NYNRINQ9P2P1 1898 aaKnown RBP13.9□□□□□ -0.18
TRIM4-201ENST00000349062 CAPN14A8MX76 684 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 HDAC3O15379 428 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 STX7O15400 261 aaKnown RBP13.9□□□□□ -0.18
TRIM4-201ENST00000349062 HOXA2O43364 376 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 NIPSNAP2O75323 286 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 ATXN1LP0C7T5 689 aaKnown RBP13.9□□□□□ -0.18
TRIM4-201ENST00000349062 ATP6V1B1P15313 513 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 CDK7P50613 346 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 TBL3Q12788 808 aaKnown RBP13.9□□□□□ -0.18
TRIM4-201ENST00000349062 PARP15Q460N3 678 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 GK5Q6ZS86 529 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 OR4L1Q8NH43 312 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 CALML6Q8TD86 181 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 SLC22A17Q8WUG5 538 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 SKA2Q8WVK7 121 aaPredicted RBP13.9□□□□□ -0.18
TRIM4-201ENST00000349062 ZNF558Q96NG5 402 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 PRKD2Q9BZL6 878 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 VCX3BQ9H321 246 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 VCX3AQ9NNX9 186 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 DDX18Q9NVP1 670 aaKnown RBP13.9□□□□□ -0.18
TRIM4-201ENST00000349062 ADA2Q9NZK5 511 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 GALPQ9UBC7 116 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 LNPEPQ9UIQ6 1025 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 PFDN1O60925 122 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 OR6B1O95007 311 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 LTA4HP09960 611 aaKnown RBP13.9□□□□□ -0.18
TRIM4-201ENST00000349062 COX4I1P13073 169 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms