RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 BRSK1Q8TDC3 778 aa19.38■□□□□ 0.69
COL9A3-201ENST00000343916 EFCAB1Q9HAE3 211 aa19.38■□□□□ 0.69
COL9A3-201ENST00000343916 TRPC7Q9HCX4 862 aa19.38■□□□□ 0.69
COL9A3-201ENST00000343916 POLR3BQ9NW08 1133 aaPredicted RBP19.38■□□□□ 0.69
COL9A3-201ENST00000343916 ARVCFO00192 962 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 PPP6CO00743 305 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 FDXRP22570 491 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 SCNN1BP51168 640 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 SGSHP51688 502 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 MRPS22P82650 360 aaKnown RBP19.37■□□□□ 0.69
COL9A3-201ENST00000343916 AP1ARQ63HQ0 302 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 PDSS2Q86YH6 399 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 STON2Q8WXE9 905 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 ZNF512Q96ME7 567 aaPredicted RBP19.37■□□□□ 0.69
COL9A3-201ENST00000343916 MEAF6Q9HAF1 191 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 CCDC167Q9P0B6 97 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 LAMA3Q16787 3333 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 LRRC14BA6NHZ5 514 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 TBKBP1A7MCY6 615 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 ACSL4O60488 711 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 RPP40O75818 363 aaKnown RBP19.37■□□□□ 0.69
COL9A3-201ENST00000343916 SIX3O95343 332 aaPredicted RBP19.37■□□□□ 0.69
COL9A3-201ENST00000343916 ZCCHC18P0CG32 403 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 CD1DP15813 335 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 IMPDH1P20839 514 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 ATP5C1P36542 298 aaKnown RBP19.37■□□□□ 0.69
COL9A3-201ENST00000343916 ZNF678Q5SXM1 525 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 ARMC3Q5W041 872 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 CWF19L1Q69YN2 538 aaKnown RBP19.37■□□□□ 0.69
COL9A3-201ENST00000343916 CYHR1Q6ZMK1 362 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 SLC22A9Q8IVM8 553 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 APLFQ8IW19 511 aaPredicted RBP19.37■□□□□ 0.69
COL9A3-201ENST00000343916 TTPALQ9BTX7 342 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 TRAF6Q9Y4K3 522 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 SPO11Q9Y5K1 396 aa19.37■□□□□ 0.69
COL9A3-201ENST00000343916 H3BMM5 538 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 POLE2P56282 527 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 HERC3Q15034 1050 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 MRNIPQ6NTE8 343 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 PCDH20Q8N6Y1 951 aaKnown RBP19.36■□□□□ 0.69
COL9A3-201ENST00000343916 FBXO22Q8NEZ5 403 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 OR4L1Q8NH43 312 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 CAPNS2Q96L46 248 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 PRICKLE1Q96MT3 831 aaPredicted RBP19.36■□□□□ 0.69
COL9A3-201ENST00000343916 KLHL4Q9C0H6 718 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 ELAC1Q9H777 363 aaKnown RBP19.36■□□□□ 0.69
COL9A3-201ENST00000343916 CATSPERZQ9NTU4 200 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 DNMT3LQ9UJW3 386 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 UBA6A0AVT1 1052 aaPredicted RBP19.36■□□□□ 0.69
COL9A3-201ENST00000343916 MAGEA13PA6NCF6 341 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 UBDO15205 165 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 SNUPNO95149 360 aaKnown RBP19.36■□□□□ 0.69
COL9A3-201ENST00000343916 INHAP05111 366 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 COL6A1P12109 1028 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 ZNF37AP17032 561 aaPredicted RBP19.36■□□□□ 0.69
COL9A3-201ENST00000343916 PMLP29590 882 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 RMDN1Q96DB5 314 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 TRIB3Q96RU7 358 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 MGME1Q9BQP7 344 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 FBRSL1Q9HCM7 1045 aaKnown RBP19.36■□□□□ 0.69
COL9A3-201ENST00000343916 GKN1Q9NS71 199 aa19.36■□□□□ 0.69
COL9A3-201ENST00000343916 UBXN8O00124 270 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 KLKB1P03952 638 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 OR4D1Q15615 310 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 UNC50Q53HI1 259 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 FBXO48Q5FWF7 155 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 ANKS3Q6ZW76 656 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 CHSY3Q70JA7 882 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 BHLHE22Q8NFJ8 381 aaPredicted RBP19.35■□□□□ 0.69
COL9A3-201ENST00000343916 OR9I1Q8NGQ6 314 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 CDKN2AIPNLQ96HQ2 116 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 FAM50BQ9Y247 325 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 PTGDR2Q9Y5Y4 395 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 SCAMP3O14828 347 aaKnown RBP19.35■□□□□ 0.69
COL9A3-201ENST00000343916 RNASEH1O60930 286 aaKnown RBP19.35■□□□□ 0.69
COL9A3-201ENST00000343916 EPOP01588 193 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 BIRC2Q13490 618 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 DEFB115Q30KQ5 88 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 GRAMD1BQ3KR37 738 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 C3orf30Q96M34 536 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 CYP2S1Q96SQ9 504 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 TSEN34Q9BSV6 310 aaKnown RBP19.35■□□□□ 0.69
COL9A3-201ENST00000343916 CINPQ9BW66 212 aaPredicted RBP19.35■□□□□ 0.69
COL9A3-201ENST00000343916 CHD5Q8TDI0 1954 aa19.35■□□□□ 0.69
COL9A3-201ENST00000343916 A0A0U1RQS6 177 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 H3BNC9 293 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 NDST3O95803 873 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 HSPA1AP0DMV8 641 aaKnown RBP19.34■□□□□ 0.69
COL9A3-201ENST00000343916 HSPA1BP0DMV9 641 aaKnown RBP19.34■□□□□ 0.69
COL9A3-201ENST00000343916 OR1D2P34982 312 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 KPNA1P52294 538 aaPredicted RBP19.34■□□□□ 0.69
COL9A3-201ENST00000343916 STC1P52823 247 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 HERVK_113P63132 956 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 SH3BP2P78314 561 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 ROR2Q01974 943 aaKnown RBP19.34■□□□□ 0.69
COL9A3-201ENST00000343916 FASTKQ14296 549 aaKnown RBP19.34■□□□□ 0.69
COL9A3-201ENST00000343916 PTPRRQ15256 657 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 PFKFB4Q16877 469 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 AGKQ53H12 422 aa19.34■□□□□ 0.69
COL9A3-201ENST00000343916 GALNT15Q8N3T1 639 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms