RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 CFAP157Q5JU67 520 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 TMEM150AQ86TG1 271 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 ZNF554Q86TJ5 538 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 KBTBD2Q8IY47 623 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 TCEAL8Q8IYN2 117 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 CCNYL1Q8N7R7 359 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 MPP4Q96JB8 637 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 NR1H4Q96RI1 486 aaPredicted RBP13.1□□□□□ -0.31
COL18A1-201ENST00000342220 CENPKQ9BS16 269 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 OXCT2Q9BYC2 517 aaPredicted RBP13.1□□□□□ -0.31
COL18A1-201ENST00000342220 NKX2-4Q9H2Z4 354 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 TMEM248Q9NWD8 314 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 COMMD3-BMI1R4GMX3 469 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 LYPLA1O75608 230 aaPredicted RBP13.1□□□□□ -0.31
COL18A1-201ENST00000342220 BAIAP3O94812 1187 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 PIGNO95427 931 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 CTSOP43234 321 aaPredicted RBP13.1□□□□□ -0.31
COL18A1-201ENST00000342220 MAGEA6P43360 314 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 IRF9Q00978 393 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 ZRANB3Q5FWF4 1079 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 TMCO4Q5TGY1 634 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 NAPRTQ6XQN6 538 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 ARHGAP24Q8N264 748 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 ITFG1Q8TB96 612 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 MRGPRX2Q96LB1 330 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 HTATIP2Q9BUP3 242 aa13.1□□□□□ -0.31
COL18A1-201ENST00000342220 MEI4A8MW99 385 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 SPECC1L-ADORA2AF8WAN1 911 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 CLDN11O75508 207 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 ASLP04424 464 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 CRHR1P34998 444 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 WASP42768 502 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 MAGEA3P43357 314 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 RAP1GDS1P52306 607 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 CDK18Q07002 472 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 STX3Q13277 289 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 HNRNPDQ14103 355 aaKnown RBP13.09□□□□□ -0.31
COL18A1-201ENST00000342220 SKIV2LQ15477 1246 aaKnown RBP13.09□□□□□ -0.31
COL18A1-201ENST00000342220 N4BP2L1Q5TBK1 243 aaPredicted RBP13.09□□□□□ -0.31
COL18A1-201ENST00000342220 SPATA24Q86W54 205 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 SCUBE1Q8IWY4 988 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 SHKBP1Q8TBC3 707 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 LZICQ8WZA0 190 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 VAT1Q99536 393 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 TASP1Q9H6P5 420 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 DNMT3BQ9UBC3 853 aaKnown RBP13.09□□□□□ -0.31
COL18A1-201ENST00000342220 TAGLN3Q9UI15 199 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 SLCO3A1Q9UIG8 710 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 PLA2G4CQ9UP65 541 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 FAM50BQ9Y247 325 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 PRR23AA6NEV1 266 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 INSIG1O15503 277 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 MAGEC1O60732 1142 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 SNNO75324 88 aaPredicted RBP13.09□□□□□ -0.31
COL18A1-201ENST00000342220 F11P03951 625 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 CD70P32970 193 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 GALK1P51570 392 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 CBLBQ13191 982 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 LIN52Q52LA3 116 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 FASTKD1Q53R41 847 aaKnown RBP13.09□□□□□ -0.31
COL18A1-201ENST00000342220 RIPOR1Q6ZS17 1223 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 LINC00523Q86TU6 105 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 PPFIBP2Q8ND30 876 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 LRRC39Q96DD0 335 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 MTBPQ96DY7 904 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 PANX3Q96QZ0 392 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 ARPC5LQ9BPX5 153 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 CCDC106Q9BWC9 280 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 GPR63Q9BZJ6 419 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 IL22Q9GZX6 179 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.09□□□□□ -0.31
COL18A1-201ENST00000342220 REV3LO60673 3130 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 BOLA2-SMG1P6H3BVE0 249 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 ITM2AO43736 263 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 ZNF789Q5FWF6 425 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 SIRPB2Q5JXA9 342 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 LY6G5CQ5SRR4 150 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 C4orf22Q6V702 233 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 ULK2Q8IYT8 1036 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 SKA2Q8WVK7 121 aaPredicted RBP13.09□□□□□ -0.31
COL18A1-201ENST00000342220 C1orf74Q96LT6 269 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 CDK5RAP1Q96SZ6 601 aaKnown RBP13.09□□□□□ -0.31
COL18A1-201ENST00000342220 ZDHHC6Q9H6R6 413 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 MKS1Q9NXB0 559 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 HSFX1Q9UBD0 423 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 SEPT3Q9UH03 358 aa13.09□□□□□ -0.31
COL18A1-201ENST00000342220 TDRKHQ9Y2W6 561 aaKnown RBP13.09□□□□□ -0.31
COL18A1-201ENST00000342220 WDR87Q6ZQQ6 2873 aa13.08□□□□□ -0.32
COL18A1-201ENST00000342220 MAP3K7O43318 606 aa13.08□□□□□ -0.32
COL18A1-201ENST00000342220 TSPAN8P19075 237 aa13.08□□□□□ -0.32
COL18A1-201ENST00000342220 ARSDP51689 593 aa13.08□□□□□ -0.32
COL18A1-201ENST00000342220 CDH4P55283 916 aa13.08□□□□□ -0.32
COL18A1-201ENST00000342220 ARHGAP15Q53QZ3 475 aa13.08□□□□□ -0.32
COL18A1-201ENST00000342220 MANEALQ5VSG8 457 aa13.08□□□□□ -0.32
COL18A1-201ENST00000342220 UMODL1-AS1Q8N2C9 162 aa13.08□□□□□ -0.32
COL18A1-201ENST00000342220 CFAP61Q8NHU2 1237 aa13.08□□□□□ -0.32
COL18A1-201ENST00000342220 SLC25A51Q9H1U9 297 aa13.08□□□□□ -0.32
COL18A1-201ENST00000342220 EBF3Q9H4W6 596 aa13.08□□□□□ -0.32
COL18A1-201ENST00000342220 IL21Q9HBE4 155 aa13.08□□□□□ -0.32
COL18A1-201ENST00000342220 PFDN4Q9NQP4 134 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms