RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 PLCD4Q9BRC7 762 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 ABCF3Q9NUQ8 709 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 DZANK1Q9NVP4 752 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 CPSF2Q9P2I0 782 aaKnown RBP13.4□□□□□ -0.26
HMGB1-202ENST00000339872 SLCO3A1Q9UIG8 710 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 RRP15Q9Y3B9 282 aaKnown RBP13.4□□□□□ -0.26
HMGB1-202ENST00000339872 CCDC85CA6NKD9 419 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 TK2O00142 265 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 PAPLNO95428 1278 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 IL1BP01584 269 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 ADH5P11766 374 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 COL6A2P12110 1019 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 POLR2EP19388 210 aaKnown RBP13.39□□□□□ -0.27
HMGB1-202ENST00000339872 MC4RP32245 332 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 RPL26P61254 145 aaKnown RBP13.39□□□□□ -0.27
HMGB1-202ENST00000339872 TYSND1Q2T9J0 566 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 TMEM215Q68D42 235 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 TRPM8Q7Z2W7 1104 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 TBC1D1Q86TI0 1168 aaPredicted RBP13.39□□□□□ -0.27
HMGB1-202ENST00000339872 LCA5Q86VQ0 697 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 SPATA6LQ8N4H0 392 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 PCDH20Q8N6Y1 951 aaKnown RBP13.39□□□□□ -0.27
HMGB1-202ENST00000339872 ST13P5Q8NFI4 369 aaPredicted RBP13.39□□□□□ -0.27
HMGB1-202ENST00000339872 C10orf82Q8WW14 230 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 FGF13Q92913 245 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 NXNL1Q96CM4 212 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 ASIC4Q96FT7 647 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 ASB16Q96NS5 453 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 CDCA3Q99618 268 aaPredicted RBP13.39□□□□□ -0.27
HMGB1-202ENST00000339872 TRIM55Q9BYV6 548 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 SLC2A11Q9BYW1 496 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 UNKQ9C0B0 810 aaKnown RBP13.39□□□□□ -0.27
HMGB1-202ENST00000339872 CEP44Q9C0F1 390 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 ZDHHC6Q9H6R6 413 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 ZNF395Q9H8N7 513 aaPredicted RBP13.39□□□□□ -0.27
HMGB1-202ENST00000339872 MAGEE1Q9HCI5 957 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 DCTN4Q9UJW0 460 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 RPL26L1Q9UNX3 145 aaKnown RBP13.39□□□□□ -0.27
HMGB1-202ENST00000339872 PKP3Q9Y446 797 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 SCN8AQ9UQD0 1980 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 A0A0J9YYE9 177 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 HGSO14964 777 aaPredicted RBP13.39□□□□□ -0.27
HMGB1-202ENST00000339872 TRBC1P01850 177 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 APOA4P06727 396 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 PSMA3P25788 255 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 CCNHP51946 323 aaPredicted RBP13.39□□□□□ -0.27
HMGB1-202ENST00000339872 OCRLQ01968 901 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 DLG1Q12959 904 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 GEN1Q17RS7 908 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 MYLK3Q32MK0 819 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 EML3Q32P44 896 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 LRRC8EQ6NSJ5 796 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 FAM45BPQ6NSW5 357 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 Q6ZVU0 165 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 RFWD2Q8NHY2 731 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 TTC8Q8TAM2 541 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 FAM45AQ8TCE6 357 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 BPIFB1Q8TDL5 484 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 CCT6BQ92526 530 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 PPP2R3CQ969Q6 453 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 ABHD8Q96I13 439 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 C7orf26Q96N11 449 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 VWA7Q9Y334 891 aa13.39□□□□□ -0.27
HMGB1-202ENST00000339872 PRRC2BQ5JSZ5 2229 aaKnown RBP13.38□□□□□ -0.27
HMGB1-202ENST00000339872 UBA6A0AVT1 1052 aaPredicted RBP13.38□□□□□ -0.27
HMGB1-202ENST00000339872 G3V2L1 256 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 SNNO75324 88 aaPredicted RBP13.38□□□□□ -0.27
HMGB1-202ENST00000339872 KLHL2O95198 593 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 ADH1CP00326 375 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 RALBP11234 206 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 CDKN2DP55273 166 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 ITGA9Q13797 1035 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 CARD16Q5EG05 197 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 ZRANB3Q5FWF4 1079 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 DPY19L3Q6ZPD9 716 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 ZSWIM9Q86XI8 627 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 SPNS2Q8IVW8 549 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 FSTL5Q8N475 847 aaPredicted RBP13.38□□□□□ -0.27
HMGB1-202ENST00000339872 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.38□□□□□ -0.27
HMGB1-202ENST00000339872 CYB5D2Q8WUJ1 264 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 SORCS1Q8WY21 1168 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 SMARCD2Q92925 531 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 MRPL38Q96DV4 380 aaKnown RBP13.38□□□□□ -0.27
HMGB1-202ENST00000339872 ZFYVE19Q96K21 471 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 GDF15Q99988 308 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 C20orf27Q9GZN8 174 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 GPAMQ9HCL2 828 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 INTS10Q9NVR2 710 aaKnown RBP13.38□□□□□ -0.27
HMGB1-202ENST00000339872 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.38□□□□□ -0.27
HMGB1-202ENST00000339872 XPR1Q9UBH6 696 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 MID2Q9UJV3 735 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 ERVW-1Q9UQF0 538 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 USH1CQ9Y6N9 552 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 C1orf232A0A0U1RR37 186 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 SERPINE1P05121 402 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 MYL2P10916 166 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 HMGCLP35914 325 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 DGKGP49619 791 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 CDKN1CP49918 316 aaPredicted RBP13.38□□□□□ -0.27
HMGB1-202ENST00000339872 PEX6Q13608 980 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms