RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 C17orf47Q8NEP4 570 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 MBD3L2Q8NHZ7 208 aaPredicted RBP1.56□□□□□ -2.16
LINC00643-201ENST00000334389 GOLGA5Q8TBA6 731 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 ANKRD7Q92527 254 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 BRF1Q92994 677 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 TADA1Q96BN2 335 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 C18orf8Q96DM3 657 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 SIPA1Q96FS4 1042 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 SMARCD1Q96GM5 515 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 GSDMCQ9BYG8 508 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 SLCO5A1Q9H2Y9 848 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 PSTPIP2Q9H939 334 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 ETNK1Q9HBU6 452 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 GLRX2Q9NS18 164 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 ZNF358Q9NW07 568 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 PIH1D1Q9NWS0 290 aaKnown RBP1.56□□□□□ -2.16
LINC00643-201ENST00000334389 TLK1Q9UKI8 766 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 PADI4Q9UM07 663 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 TP53TG5Q9Y2B4 290 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 TLR6Q9Y2C9 796 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 NEU2Q9Y3R4 380 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 HEBP2Q9Y5Z4 205 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 COL6A3P12111 3177 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 A8MXK9 166 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 SHISA8B8ZZ34 492 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 IFNL4K9M1U5 179 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 CES2O00748 559 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 SRGAP3O43295 1099 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 CPNE3O75131 537 aaKnown RBP1.56□□□□□ -2.16
LINC00643-201ENST00000334389 RFPL2O75678 378 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 SLC22A3O75751 556 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 CDK2AP2O75956 126 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 SLITRK5O94991 958 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 DNTTP04053 509 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 CYP2D6P10635 497 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 ZNF30P17039 623 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 NELFEP18615 380 aaKnown RBP1.56□□□□□ -2.16
LINC00643-201ENST00000334389 HOXD9P28356 352 aaPredicted RBP1.56□□□□□ -2.16
LINC00643-201ENST00000334389 OAS2P29728 719 aaKnown RBP1.56□□□□□ -2.16
LINC00643-201ENST00000334389 TLX1P31314 330 aaPredicted RBP1.56□□□□□ -2.16
LINC00643-201ENST00000334389 RARRES1P49788 294 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 RPA4Q13156 261 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 PDK3Q15120 406 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 LONRF3Q496Y0 759 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 ZNF789Q5FWF6 425 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 LDLRAP1Q5SW96 308 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 NDUFAF5Q5TEU4 345 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 PRAMEF17Q5VTA0 474 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 CCDC73Q6ZRK6 1079 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 SEPT14Q6ZU15 432 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 DOK3Q7L591 496 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 SLC29A4Q7RTT9 530 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 TXNDC5Q8NBS9 432 aaKnown RBP1.56□□□□□ -2.16
LINC00643-201ENST00000334389 EHBP1Q8NDI1 1231 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 ARMC2Q8NEN0 867 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 OR5K2Q8NHB8 316 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 RIN3Q8TB24 985 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 FAM71BQ8TC56 605 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 CREB3L4Q8TEY5 395 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 CHTF18Q8WVB6 975 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 FRMD6Q96NE9 622 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 PTCHD1Q96NR3 888 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 PYM1Q9BRP8 204 aaKnown RBP1.56□□□□□ -2.16
LINC00643-201ENST00000334389 SFXN3Q9BWM7 321 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 PINK1Q9BXM7 581 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 PITHD1Q9GZP4 211 aaPredicted RBP1.56□□□□□ -2.16
LINC00643-201ENST00000334389 RACGAP1Q9H0H5 632 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 PUS7LQ9H0K6 701 aaKnown RBP1.56□□□□□ -2.16
LINC00643-201ENST00000334389 NAPBQ9H115 298 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 UNC45AQ9H3U1 944 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 TFB2MQ9H5Q4 396 aaKnown RBP1.56□□□□□ -2.16
LINC00643-201ENST00000334389 DIAPH3Q9NSV4 1193 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 ARHGEF38Q9NXL2 777 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 MIS18AQ9NYP9 233 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 PCDHA4Q9UN74 947 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 TSC22D4Q9Y3Q8 395 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 FADS3Q9Y5Q0 445 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 NPFFR2Q9Y5X5 522 aa1.56□□□□□ -2.16
LINC00643-201ENST00000334389 GCN1Q92616 2671 aaKnown RBP1.56□□□□□ -2.16
LINC00643-201ENST00000334389 KCNU1A8MYU2 1149 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 BACH1O14867 736 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 MSH4O15457 936 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 GSC2O15499 205 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 OIP5O43482 229 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 MAN1A2O60476 641 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 ERLIN2O94905 339 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 PAEPP09466 180 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 PAMP19021 973 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 UGT1A4P22310 534 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 GBP1P32455 592 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 IDUAP35475 653 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 HCAR3P49019 387 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 CENPAP49450 140 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 IST1P53990 364 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 HILS1P60008 231 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 SH3BP2P78314 561 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 PTK2Q05397 1052 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 PPP2R3AQ06190 1150 aa1.55□□□□□ -2.16
LINC00643-201ENST00000334389 EXOSC9Q06265 439 aaKnown RBP1.55□□□□□ -2.16
LINC00643-201ENST00000334389 FOXL1Q12952 345 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms