RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 METAP2P50579 478 aaKnown RBP eCLIP3.42□□□□□ -1.86
HMGB1-201ENST00000326004 F2RL1P55085 397 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 ABATP80404 500 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 ZBED6P86452 979 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 SORDQ00796 357 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 ECT2LQ008S8 904 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 CEBPZQ03701 1054 aaKnown RBP3.42□□□□□ -1.86
HMGB1-201ENST00000326004 PRKG2Q13237 762 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 MED22Q15528 200 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 ADIPOQQ15848 244 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 SPATA1Q5VX52 437 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 ITPRIPL1Q6GPH6 555 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 TYW3Q6IPR3 259 aaKnown RBP3.42□□□□□ -1.86
HMGB1-201ENST00000326004 METTL2BQ6P1Q9 378 aaKnown RBP3.42□□□□□ -1.86
HMGB1-201ENST00000326004 FBXO46Q6PJ61 603 aaPredicted RBP3.42□□□□□ -1.86
HMGB1-201ENST00000326004 FAM216AQ8WUB2 273 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 ASB5Q8WWX0 329 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 OIT3Q8WWZ8 545 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 METTL2AQ96IZ6 378 aaKnown RBP3.42□□□□□ -1.86
HMGB1-201ENST00000326004 BARD1Q99728 777 aaKnown RBP3.42□□□□□ -1.86
HMGB1-201ENST00000326004 SH3GL2Q99962 352 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 NCAPGQ9BPX3 1015 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 ESRP2Q9H6T0 727 aaKnown RBP3.42□□□□□ -1.86
HMGB1-201ENST00000326004 SH2D4AQ9H788 454 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 KAT14Q9H8E8 782 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 POLR1BQ9H9Y6 1135 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 RRP7BPQ9NSQ0 103 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 SEPT11Q9NVA2 429 aaKnown RBP3.42□□□□□ -1.86
HMGB1-201ENST00000326004 WNT16Q9UBV4 365 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 RCOR1Q9UKL0 485 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 MAU2Q9Y6X3 613 aa3.42□□□□□ -1.86
HMGB1-201ENST00000326004 ARAP1Q96P48 1450 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 A8MZ25 164 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 J3KR12 359 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 AP3D1O14617 1153 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 HCRTR2O43614 444 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 DOK2O60496 412 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 SERPINI2O75830 405 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 NKX2-2O95096 273 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 CH25HO95992 272 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 ALOX12P18054 663 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 MAOAP21397 527 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 HNRNPH1P31943 449 aaKnown RBP3.41□□□□□ -1.86
HMGB1-201ENST00000326004 PSMB10P40306 273 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 TFAP4Q01664 338 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 EGR4Q05215 589 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 CRYZQ08257 329 aaKnown RBP3.41□□□□□ -1.86
HMGB1-201ENST00000326004 AIMP2Q13155 320 aaKnown RBP3.41□□□□□ -1.86
HMGB1-201ENST00000326004 PDE1CQ14123 709 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-201ENST00000326004 C2orf68Q2NKX9 166 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 MMEL1Q495T6 779 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 SOWAHCQ53LP3 525 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-201ENST00000326004 GGNBP1Q5YKI7 109 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 FAM205BPQ63HN1 556 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 KLHL35Q6PF15 583 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 CRELD2Q6UXH1 353 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-201ENST00000326004 GLDNQ6ZMI3 551 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-201ENST00000326004 BRINP3Q76B58 766 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 FASTKD5Q7L8L6 764 aaKnown RBP3.41□□□□□ -1.86
HMGB1-201ENST00000326004 ZC3HC1Q86WB0 502 aaKnown RBP3.41□□□□□ -1.86
HMGB1-201ENST00000326004 TICAM1Q8IUC6 712 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 HACE1Q8IYU2 909 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 RNF168Q8IYW5 571 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-201ENST00000326004 FBXL14Q8N1E6 418 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 RRNAD1Q96FB5 475 aaKnown RBP3.41□□□□□ -1.86
HMGB1-201ENST00000326004 CCDC34Q96HJ3 373 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 PGAM5Q96HS1 289 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 TXNDC15Q96J42 360 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 CMTM3Q96MX0 182 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 WDFY2Q96P53 400 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 NTPCRQ9BSD7 190 aaKnown RBP3.41□□□□□ -1.86
HMGB1-201ENST00000326004 SLC25A33Q9BSK2 321 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 C1QTNF5Q9BXJ0 243 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 NDST4Q9H3R1 872 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 EBF3Q9H4W6 596 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 PDZD7Q9H5P4 517 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 WDR26Q9H7D7 661 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 GPR108Q9NPR9 543 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 HINT3Q9NQE9 182 aaKnown RBP3.41□□□□□ -1.86
HMGB1-201ENST00000326004 NSMCE4AQ9NXX6 385 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 CNOT8Q9UFF9 292 aaKnown RBP3.41□□□□□ -1.86
HMGB1-201ENST00000326004 CDC14AQ9UNH5 594 aa3.41□□□□□ -1.86
HMGB1-201ENST00000326004 ATXN2Q99700 1313 aaKnown RBP3.41□□□□□ -1.86
HMGB1-201ENST00000326004 DOCK7Q96N67 2140 aa3.4□□□□□ -1.86
HMGB1-201ENST00000326004 A0A0U1RQJ8 604 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 FRMD3A2A2Y4 597 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 FAM90A8PA6NJQ4 464 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 ZIC3O60481 467 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 KCNJ13O60928 360 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 DAB1O75553 588 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 GAGE7O76087 117 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 PRSS2P07478 247 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 FAM90A13PP0C7W8 464 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 FAM90A24PP0C7X0 464 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 GAGE12FP0CL80 117 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 GAGE12GP0CL81 117 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 GAGE12IP0CL82 117 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 RARGP13631 454 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 IL7RP16871 459 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 TMEM11P17152 192 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms