RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 CCNJLQ8IV13 435 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 OR52K2Q8NGK3 314 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 SELENOMQ8WWX9 145 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 FUCA2Q9BTY2 467 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 TMEM39AQ9NV64 488 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 PCDHA11Q9Y5I1 949 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 FADS3Q9Y5Q0 445 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 A0A0X1KG70 313 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 RCCD1A6NED2 376 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 MYBL2P10244 700 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 THRBP10828 461 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 SWI5Q1ZZU3 235 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 ARMC12Q5T9G4 340 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 GPRIN3Q6ZVF9 776 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.92□□□□□ -1.14
CIITA-201ENST00000324288 FAM205AQ6ZU69 1335 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 PRAMEF33A0A0G2JMD5 474 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 J3QRK9 145 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 PRAMEF10O60809 474 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 DHFRP00374 187 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 CD40LGP29965 261 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 PIK3R6Q5UE93 754 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 RFWD3Q6PCD5 774 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 UBE2Q1Q7Z7E8 422 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 DENND1CQ8IV53 801 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 ABRAQ8N0Z2 381 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 FBXL8Q96CD0 374 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 ZBTB45Q96K62 511 aaPredicted RBP7.92□□□□□ -1.14
CIITA-201ENST00000324288 EQTNQ9NQ60 294 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 MAU2Q9Y6X3 613 aa7.92□□□□□ -1.14
CIITA-201ENST00000324288 LSM8O95777 96 aaKnown RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 RPL38P63173 70 aaKnown RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 RIPK1Q13546 671 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 PLET1Q6UQ28 207 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 OR2L5Q8NG80 312 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 CRAMP1Q96RY5 1269 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 MRPL45Q9BRJ2 306 aaKnown RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 TREM1Q9NP99 234 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 CACNA1GO43497 2377 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 GAS2O43903 313 aaKnown RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 SLC25A12O75746 678 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 CYP2A6P11509 494 aaPredicted RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 PTPN3P26045 913 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 AP1S2P56377 157 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 TXNDC11Q6PKC3 985 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 FAM9CQ8IZT9 166 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 ETNPPLQ8TBG4 499 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 Q96MT0 163 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 ELAC1Q9H777 363 aaKnown RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 ETNK2Q9NVF9 386 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 TRIM17Q9Y577 477 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 CRB1P82279 1406 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 GNB5O14775 395 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 EFNA1P20827 205 aaPredicted RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 MPP2Q14168 576 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 GALNT3Q14435 633 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 CRTC2Q53ET0 693 aaPredicted RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 CD302Q8IX05 232 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 ANKRD13AQ8IZ07 590 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 DEFB106AQ8N104 65 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 GTF3C2Q8WUA4 911 aaPredicted RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 C11orf24Q96F05 449 aaPredicted RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 SLC6A15Q9H2J7 730 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 USP42Q9H9J4 1324 aaKnown RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 C9IYK1 514 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 IGFBP5P24593 272 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 GJA9P57773 515 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 MAD2L1Q13257 205 aaPredicted RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 MFSD10Q14728 455 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 BEX2Q9BXY8 128 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 BEX1Q9HBH7 125 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 ACP6Q9NPH0 428 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 A0A1W2PPM1 405 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 ZBTB14O43829 449 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 MGRN1O60291 552 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 SDC2P34741 201 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 CXorf40AQ8TE69 158 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 C11orf16Q9NQ32 467 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 GNPTGQ9UJJ9 305 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 ITGA11Q9UKX5 1188 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 WFS1O76024 890 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 CLPXO76031 633 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 CSN2P05814 226 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 NR2F1P10589 423 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 FAM98AQ8NCA5 519 aaKnown RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 PRMT6Q96LA8 375 aaPredicted RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 GIT1Q9Y2X7 761 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 PCDHGA10Q9Y5H3 936 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 SCN8AQ9UQD0 1980 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 ABCC3O15438 1527 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 ADCY10Q96PN6 1610 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 PRH1P02810 166 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 EPHA3P29320 983 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 RPL9P32969 192 aaKnown RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 ZC3H12AQ5D1E8 599 aaKnown RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 RERGQ96A58 199 aaPredicted RBP7.91□□□□□ -1.14
CIITA-201ENST00000324288 SKA1Q96BD8 255 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 TMEM216Q9P0N5 145 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 MARCH2Q9P0N8 246 aa7.91□□□□□ -1.14
CIITA-201ENST00000324288 VPS4AQ9UN37 437 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms