RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 KCNQ4P56696 695 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 CENPCQ03188 943 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 PCDH1Q08174 1060 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 SNAPC1Q16533 368 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 BTBD16Q32M84 506 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 PRRG4Q9BZD6 226 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 TAF1DQ9H5J8 278 aaPredicted RBP7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 AGPAT3Q9NRZ7 376 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 ABHD14A-ACY1A0A1B0GW23 586 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 TTC26A0AVF1 554 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 ANO9A1A5B4 782 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 FAM221BA6H8Z2 402 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 DFNA5O60443 496 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 ASGR1P07306 291 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 POLD2P49005 469 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 CHAF1BQ13112 559 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 GINS1Q14691 196 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 EPHA7Q15375 998 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 EZH2Q15910 746 aaKnown RBP7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 EFHC1Q5JVL4 640 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 RPL7L1Q6DKI1 246 aaKnown RBP7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 PID1Q7Z2X4 250 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 TMC7Q7Z402 723 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 SH3RF1Q7Z6J0 888 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 OAFQ86UD1 273 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 SLITRK4Q8IW52 837 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 RASGEF1CQ8N431 466 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 DNAJB14Q8TBM8 379 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 CPNE4Q96A23 557 aaPredicted RBP7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 TSPAN17Q96FV3 270 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 GTPBP2Q9BX10 602 aaKnown RBP7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 BET1LQ9NYM9 111 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 MKLN1Q9UL63 735 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF510Q9Y2H8 683 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 POMT1Q9Y6A1 747 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 BICRAQ9NZM4 1560 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 SH3PXD2BA1X283 911 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 HYKKA2RU49 373 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 CPED1A4D0V7 1026 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 PGRP06401 933 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 MYCLP1P12525 358 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 FUT4P22083 530 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 HTR3AP46098 478 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 ENTPD1P49961 510 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 CAMK2GQ13555 558 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 GNASQ5JWF2 1037 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 C6orf52Q5T4I8 152 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 LRRC38Q5VT99 294 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 MCEMP1Q8IX19 187 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 CLIP4Q8N3C7 705 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 SPATA4Q8NEY3 305 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 GTF3C2Q8WUA4 911 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 BORCS5Q969J3 196 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 FAM136AQ96C01 138 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 C1GALT1C1Q96EU7 318 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 PRAM1Q96QH2 718 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF416Q9BWM5 594 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 SLC5A7Q9GZV3 580 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 NMRK2Q9NPI5 230 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 QPCTLQ9NXS2 382 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 PACSIN3Q9UKS6 424 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF214Q9UL59 606 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 PALD1Q9ULE6 856 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 KCNE2Q9Y6J6 123 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 CFTRP13569 1480 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 PAPSS1O43252 624 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 HNRNPA2B1P22626 353 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 OR3A2P47893 321 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 CDH8P55286 799 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 PRMT2P55345 433 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 ARHGAP1Q07960 439 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 BNIP3Q12983 259 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 MKRN4PQ13434 485 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 LAPTM5Q13571 262 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 SNRNP35Q16560 246 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 HIST2H3PS2Q5TEC6 136 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 FAM69BQ5VUD6 431 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 TRNP1Q6NT89 227 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 PLEKHG7Q6ZR37 379 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 MYDGFQ969H8 173 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 SERPINB12Q96P63 405 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 SYT15Q9BQS2 421 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 KAT8Q9H7Z6 458 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 LY9Q9HBG7 655 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 CYP8B1Q9UNU6 501 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 C15orf38-AP3S2A0A0A6YYH1 394 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 B4GAT1O43505 415 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 CYTIPO60759 359 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 ANXA6P08133 673 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 SERPINA6P08185 405 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 UQCRFS1P1P0C7P4 283 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 CYP4B1P13584 511 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 HTR1BP28222 390 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 RPL9P32969 192 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF445P59923 1031 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 FGL1Q08830 312 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 SCAPQ12770 1279 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 ARHGEF7Q14155 803 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 RALGPS1Q5JS13 557 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 B3GLCTQ6Y288 498 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms