RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 BARX2Q9UMQ3 279 aaPredicted RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 BCS1LQ9Y276 419 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 MTF2Q9Y483 593 aaPredicted RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 STRCP1A6NGW2 1772 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 A0A088AWK7 358 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 APRTP07741 180 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 L1CAMP32004 1257 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 AFF1P51825 1210 aaKnown RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 AP2S1P53680 142 aaPredicted RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 DNAJB13P59910 316 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 TNK2Q07912 1038 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 VAC14Q08AM6 782 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 SEMA3AQ14563 771 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 PGS1Q32NB8 556 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 C1orf220Q5T0J3 134 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 MBLAC2Q68D91 279 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 ARMC6Q6NXE6 501 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 PCDH19Q8TAB3 1148 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 PKP3Q9Y446 797 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 C3orf70A6NLC5 250 aaPredicted RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 UBDO15205 165 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 EDIL3O43854 480 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 CAPNS1P04632 268 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 RLN1P04808 185 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 DARSP14868 501 aaKnown RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 ACADLP28330 430 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 MIPP30301 263 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 CD151P48509 253 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 MPP3Q13368 585 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 USP10Q14694 798 aaKnown RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 NRF1Q16656 503 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 ATAD3CQ5T2N8 411 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 UNC5AQ6ZN44 842 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 METTL23Q86XA0 190 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 CYP4Z2PQ8N1L4 340 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 LRRC52Q8N7C0 313 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 HEXDCQ8WVB3 486 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 PGBD4Q96DM1 585 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 FBXO6Q9NRD1 293 aaPredicted RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 PLSCR1O15162 318 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 RBMXL2O75526 392 aaKnown RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 ARP10275 920 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 EIF2AK2P19525 551 aaKnown RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 GCAP28676 217 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 SEPHS1P49903 392 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 GEMP55040 296 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 MTM1Q13496 603 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 DGKDQ16760 1214 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 TIGD7Q6NT04 549 aaPredicted RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 DSG4Q86SJ6 1040 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 PLCZ1Q86YW0 608 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 HIPK1Q86Z02 1210 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 SHCBP1Q8NEM2 672 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 TRPV3Q8NET8 790 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 SEMA4DQ92854 862 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 ASIC4Q96FT7 647 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 CERS2Q96G23 380 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 RNF38Q9H0F5 515 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 EBF3Q9H4W6 596 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 PCDHGA10Q9Y5H3 936 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 HSPE1-MOB4S4R3N1 261 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 CCDC163A0A0D9SF12 145 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 TP73O15350 636 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 AVILO75366 819 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 NOS3P29474 1203 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 GLUD2P49448 558 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 PRKCEQ02156 737 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 RGS1Q08116 209 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 CCNYL2Q5T2Q4 361 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 GPR107Q5VW38 600 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 FRMD7Q6ZUT3 714 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 ZSWIM2Q8NEG5 633 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 VPS33AQ96AX1 596 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 TMEM176AQ96HP8 235 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 S100A13Q99584 98 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 TRIM2Q9C040 744 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 TMLHEQ9NVH6 421 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 GMIPQ9P107 970 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 RPS6KA6Q9UK32 745 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 GNEQ9Y223 722 aaKnown RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 WASF2Q9Y6W5 498 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 G3V2T6 193 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 STX16-NPEPL1H3BU86 382 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 M0QYV0 167 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 STX16O14662 325 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 DHX15O43143 795 aaKnown RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 RFPL1O75677 317 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 IFNA16P05015 189 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 CCNA2P20248 432 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 DSG3P32926 999 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 GRIK1P39086 918 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 RPL35P42766 123 aaKnown RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 EEFSECP57772 596 aaKnown RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 POU4F1Q01851 419 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 SLC6A3Q01959 620 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 PON2Q15165 354 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 DPYSL2Q16555 572 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 TBC1D25Q3MII6 688 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 TEX44Q53QW1 395 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 FAM76BQ5HYJ3 339 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms