RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 CLEC4AQ9UMR7 237 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 UMODL1Q5DID0 1318 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 E7ENX8 843 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 PMM2O15305 246 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 PIGNO95427 931 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 ITIH1P19827 911 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 AP3S2P59780 193 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 MED22Q15528 200 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 SYT12Q8IV01 421 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 SLC16A10Q8TF71 515 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 TNFAIP8L1Q8WVP5 186 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 COPS4Q9BT78 406 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 ALG9Q9H6U8 611 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 LRRC4CQ9HCJ2 640 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 MAFO75444 373 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 MBL2P11226 248 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 ACO1P21399 889 aaKnown RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 RAPSNQ13702 412 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 LCN1P1Q5VSP4 162 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 TRIM74Q86UV6 250 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 TRIM73Q86UV7 250 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 PIGKQ92643 395 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 MBOAT7Q96N66 472 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 APBA2Q99767 749 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 MAF1Q9H063 256 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 TRPV5Q9NQA5 729 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 GRHL1Q9NZI5 618 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 FETUBQ9UGM5 382 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 CDK5RAP2Q96SN8 1893 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 FAM240BA0A1B0GVZ2 78 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 BCKDKO14874 412 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 KDM4BO94953 1096 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 NPR2P20594 1047 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 MYBPC3Q14896 1274 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 PCDH20Q8N6Y1 951 aaKnown RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 SLC2A14Q8TDB8 520 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 EFHD2Q96C19 240 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 LRIG2O94898 1065 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 SNRPB2P08579 225 aaKnown RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 C6orf222P0C671 652 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 HOXB8P17481 243 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 RPL4P36578 427 aaKnown RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 OLR1P78380 273 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 BST1Q10588 318 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 DEF8Q6ZN54 512 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 MCOLN3Q8TDD5 553 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 GAL3ST3Q96A11 431 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 FAM124BQ9H5Z6 455 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 VPS4AQ9UN37 437 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 ZNF232Q9UNY5 417 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 LRRC14BA6NHZ5 514 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 CYP1A1P04798 512 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 HOXD10P28358 340 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 CCR1P32246 355 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 RHOAP61586 193 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 HELQQ8TDG4 1101 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 SLCO2A1Q92959 643 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 CELF6Q96J87 481 aaKnown RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 AIFM2Q9BRQ8 373 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 INTS10Q9NVR2 710 aaKnown RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 MTF2Q9Y483 593 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 CCDC189A1A4V9 331 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 C5orf60A6NFR6 353 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 FGF10O15520 208 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 TRMUO75648 421 aaKnown RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 NELFEP18615 380 aaKnown RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 EGFLAMQ63HQ2 1017 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 AGMOQ6ZNB7 445 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 CLNKQ7Z7G1 428 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 TTLL13PA6NNM8 815 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 H7C4K7 107 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 CBX5P45973 191 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 NRG3P56975 720 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 TUBB3Q13509 450 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 C1orf189Q5VU69 101 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 UBE2Q1Q7Z7E8 422 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 UCMAQ8WVF2 138 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 SAE1Q9UBE0 346 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 HOXC6P09630 235 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 MMP8P22894 467 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 FMO4P31512 558 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 BNIP1Q12981 228 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 PAGE2Q7Z2X7 111 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 POP5Q969H6 163 aaKnown RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 MTFMTQ96DP5 389 aaKnown RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 DIRAS2Q96HU8 199 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 EBNA1BP2Q99848 306 aaKnown RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 CRYL1Q9Y2S2 319 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 TNPO3Q9Y5L0 923 aaKnown RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 EPORP19235 508 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 MAPK9P45984 424 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 OR1G1P47890 313 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 ACSM2AQ08AH3 577 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 KCNA10Q16322 511 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 MTX3Q5HYI7 312 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 ACSM2BQ68CK6 577 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 PACS1Q6VY07 963 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 ILDR2Q71H61 639 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 CLHC1Q8NHS4 586 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms