RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 ESRRAP11474 423 aaPredicted RBP15.33■□□□□ 0.04
SF3B4-201ENST00000271628 LPOP22079 712 aaPredicted RBP15.33■□□□□ 0.04
SF3B4-201ENST00000271628 GCKP35557 465 aa15.33■□□□□ 0.04
SF3B4-201ENST00000271628 CCR2P41597 374 aa15.33■□□□□ 0.04
SF3B4-201ENST00000271628 ZNF140P52738 457 aaPredicted RBP15.33■□□□□ 0.04
SF3B4-201ENST00000271628 AGAP9Q5VTM2 703 aa15.33■□□□□ 0.04
SF3B4-201ENST00000271628 LIPMQ5VYY2 423 aa15.33■□□□□ 0.04
SF3B4-201ENST00000271628 KLC3Q6P597 504 aa15.33■□□□□ 0.04
SF3B4-201ENST00000271628 APCDD1Q8J025 514 aa15.33■□□□□ 0.04
SF3B4-201ENST00000271628 TMEM151AQ8N4L1 468 aa15.33■□□□□ 0.04
SF3B4-201ENST00000271628 MDGA1Q8NFP4 955 aa15.33■□□□□ 0.04
SF3B4-201ENST00000271628 SHKBP1Q8TBC3 707 aa15.33■□□□□ 0.04
SF3B4-201ENST00000271628 PDCD6IPQ8WUM4 868 aaKnown RBP15.33■□□□□ 0.04
SF3B4-201ENST00000271628 MRPL57Q9BQC6 102 aaKnown RBP15.33■□□□□ 0.04
SF3B4-201ENST00000271628 MRPL46Q9H2W6 279 aaKnown RBP15.33■□□□□ 0.04
SF3B4-201ENST00000271628 GPAMQ9HCL2 828 aa15.33■□□□□ 0.04
SF3B4-201ENST00000271628 ABCB8Q9NUT2 735 aa15.33■□□□□ 0.04
SF3B4-201ENST00000271628 INTS10Q9NVR2 710 aaKnown RBP15.33■□□□□ 0.04
SF3B4-201ENST00000271628 HCFC1R1Q9NWW0 138 aa15.33■□□□□ 0.04
SF3B4-201ENST00000271628 FCF1Q9Y324 198 aaKnown RBP15.33■□□□□ 0.04
SF3B4-201ENST00000271628 ANKRD36A6QL64 1941 aa15.33■□□□□ 0.04
SF3B4-201ENST00000271628 ALPK3Q96L96 1907 aa15.33■□□□□ 0.04
SF3B4-201ENST00000271628 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.32■□□□□ 0.04
SF3B4-201ENST00000271628 PFDN6O15212 129 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 BUD23O43709 281 aaKnown RBP15.32■□□□□ 0.04
SF3B4-201ENST00000271628 FZD6O60353 706 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 CSPG5O95196 566 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 PMLP29590 882 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 CSNK1DP48730 415 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 AQP5P55064 265 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 ZNF460Q14592 562 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 RBM20Q5T481 1227 aaKnown RBP15.32■□□□□ 0.04
SF3B4-201ENST00000271628 AFTPHQ6ULP2 937 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 ARHGAP24Q8N264 748 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 OR4K2Q8NGD2 314 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 MCUR1Q96AQ8 359 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 NXNL1Q96CM4 212 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 TCF12Q99081 682 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 NDNQ99608 321 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 C17orf80Q9BSJ5 609 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 SUDS3Q9H7L9 328 aaPredicted RBP15.32■□□□□ 0.04
SF3B4-201ENST00000271628 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.32■□□□□ 0.04
SF3B4-201ENST00000271628 STOML1Q9UBI4 398 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 DNAJC16Q9Y2G8 782 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 SPO11Q9Y5K1 396 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 HELZP42694 1942 aaKnown RBP15.32■□□□□ 0.04
SF3B4-201ENST00000271628 OR51F1A6NGY5 319 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 TARM1B6A8C7 271 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 TK2O00142 265 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 CCL22O00626 93 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 RFPL2O75678 378 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 RHOP08100 348 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 LTA4HP09960 611 aaKnown RBP15.32■□□□□ 0.04
SF3B4-201ENST00000271628 GRIA4P48058 902 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 PTDSS1P48651 473 aaKnown RBP15.32■□□□□ 0.04
SF3B4-201ENST00000271628 STC1P52823 247 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 EPHB1P54762 984 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 LMAN2Q12907 356 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 TRAF2Q12933 501 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 PLEKHG6Q3KR16 790 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 PDE12Q6L8Q7 609 aaKnown RBP15.32■□□□□ 0.04
SF3B4-201ENST00000271628 ZNF557Q8N988 423 aaPredicted RBP15.32■□□□□ 0.04
SF3B4-201ENST00000271628 GPR78Q96P69 363 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 TDP1Q9NUW8 608 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 TAS2R1Q9NYW7 299 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 PLK2Q9NYY3 685 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 MARCH4Q9P2E8 410 aaPredicted RBP15.32■□□□□ 0.04
SF3B4-201ENST00000271628 MARCOQ9UEW3 520 aaPredicted RBP15.32■□□□□ 0.04
SF3B4-201ENST00000271628 VPS9D1Q9Y2B5 631 aa15.32■□□□□ 0.04
SF3B4-201ENST00000271628 FCHO1O14526 889 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 LYPLA1O75608 230 aaPredicted RBP15.31■□□□□ 0.04
SF3B4-201ENST00000271628 SNUPNO95149 360 aaKnown RBP15.31■□□□□ 0.04
SF3B4-201ENST00000271628 MT-CO1P00395 513 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 RBP1P09455 135 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 GLRBP48167 497 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 RPL26P61254 145 aaKnown RBP15.31■□□□□ 0.04
SF3B4-201ENST00000271628 PTPRCAPQ14761 206 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 TEAD2Q15562 447 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 TYSND1Q2T9J0 566 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 ARMC12Q5T9G4 340 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 KCNV2Q8TDN2 545 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 CCDC126Q96EE4 140 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 UBXN10Q96LJ8 280 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 SORT1Q99523 831 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 OLFM1Q99784 485 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 POPDC3Q9HBV1 291 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 XPR1Q9UBH6 696 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 SUFUQ9UMX1 484 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 CRYL1Q9Y2S2 319 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 PCDHB9Q9Y5E1 797 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.31■□□□□ 0.04
SF3B4-201ENST00000271628 NRG2O14511 850 aaPredicted RBP15.31■□□□□ 0.04
SF3B4-201ENST00000271628 HSPA4LO95757 839 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 SBK3P0C264 359 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 ATP6V1C1P21283 382 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 HK2P52789 917 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 BLMHQ13867 455 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 ACAP2Q15057 778 aa15.31■□□□□ 0.04
SF3B4-201ENST00000271628 KHDC1Q4VXA5 237 aaKnown RBP15.31■□□□□ 0.04
SF3B4-201ENST00000271628 LDB1Q86U70 411 aaPredicted RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms