RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 NFKBIBQ15653 356 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 RALGPS1Q5JS13 557 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 CCDC122Q5T0U0 273 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 MARC1Q5VT66 337 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 PNCKQ6P2M8 343 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 OGFOD3Q6PK18 319 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 IGF2-ASQ6U949 168 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 RBM44Q6ZP01 1051 aaKnown RBP9.75□□□□□ -0.85
VPS41-201ENST00000265745 GKN2Q86XP6 184 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 SPACA3Q8IXA5 215 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 PELI3Q8N2H9 469 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 PAF1Q8N7H5 531 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 OR56A4Q8NGH8 313 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 PCDH19Q8TAB3 1148 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 WDR48Q8TAF3 677 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 FAM71BQ8TC56 605 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 OR1E3Q8WZA6 343 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 ZNF592Q92610 1267 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 PDXPQ96GD0 296 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 ATXN7L3BQ96GX2 97 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 COQ10AQ96MF6 247 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 SLC46A1Q96NT5 459 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 CCDC3Q9BQI4 270 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 LGR4Q9BXB1 951 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 FGF22Q9HCT0 170 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 ASCL3Q9NQ33 180 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 SIRPGQ9P1W8 387 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 RCOR3Q9P2K3 495 aaPredicted RBP9.75□□□□□ -0.85
VPS41-201ENST00000265745 B4GALT6Q9UBX8 382 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 ANAPC7Q9UJX3 599 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 NENFQ9UMX5 172 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 GPR34Q9UPC5 381 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 DOLKQ9UPQ8 538 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 ENTPD2Q9Y5L3 495 aa9.75□□□□□ -0.85
VPS41-201ENST00000265745 CHD5Q8TDI0 1954 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 A0A1W2PQ67 120 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 GOLGA6L19H0YKK7 550 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 CACNB4O00305 520 aaPredicted RBP9.74□□□□□ -0.85
VPS41-201ENST00000265745 HEXIM1O94992 359 aaKnown RBP9.74□□□□□ -0.85
VPS41-201ENST00000265745 CD48P09326 243 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 KELP23276 732 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 HNRNPH3P31942 346 aaKnown RBP9.74□□□□□ -0.85
VPS41-201ENST00000265745 CASP14P31944 242 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 SERPINB6P35237 376 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 MMP13P45452 471 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 CDH6P55285 790 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 COPS2P61201 443 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 MAXP61244 160 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 TRAF2Q12933 501 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 MMRN1Q13201 1228 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 KRT81Q14533 505 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 ACOX1Q15067 660 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 TCEA2Q15560 299 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 CNGA3Q16281 694 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 ATP13A4Q4VNC1 1196 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 BBS5Q8N3I7 341 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 ATPAF2Q8N5M1 289 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 TEX26Q8N6G2 289 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 KYQ8NBH2 561 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 PLPP7Q8NBV4 271 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 ZNF248Q8NDW4 579 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 GPR156Q8NFN8 814 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 OR6C4Q8NGE1 309 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 PDCD6IPQ8WUM4 868 aaKnown RBP9.74□□□□□ -0.85
VPS41-201ENST00000265745 NSMCE1Q8WV22 266 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 SCRN2Q96FV2 425 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 PRR11Q96HE9 360 aaPredicted RBP9.74□□□□□ -0.85
VPS41-201ENST00000265745 MCCC1Q96RQ3 725 aaPredicted RBP9.74□□□□□ -0.85
VPS41-201ENST00000265745 WDR26Q9H7D7 661 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 MRPL40Q9NQ50 206 aaKnown RBP9.74□□□□□ -0.85
VPS41-201ENST00000265745 IFNKQ9P0W0 207 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 PHTF1Q9UMS5 762 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 SATB2Q9UPW6 733 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 PCDHGA8Q9Y5G5 932 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 NBEAQ8NFP9 2946 aa9.74□□□□□ -0.85
VPS41-201ENST00000265745 IGSF10Q6WRI0 2623 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 SMG1Q96Q15 3661 aaKnown RBP9.73□□□□□ -0.85
VPS41-201ENST00000265745 A0A1W2PQM1 296 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 NPIPB15A6NHN6 443 aaPredicted RBP9.73□□□□□ -0.85
VPS41-201ENST00000265745 PDE2AO00408 941 aaPredicted RBP9.73□□□□□ -0.85
VPS41-201ENST00000265745 PGLSO95336 258 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 FUCA1P04066 466 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 LHCGRP22888 699 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 NFKBIAP25963 317 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 RBMS1P29558 406 aaKnown RBP9.73□□□□□ -0.85
VPS41-201ENST00000265745 VIPR1P32241 457 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 ETV3P41162 512 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 SSR1P43307 286 aaKnown RBP9.73□□□□□ -0.85
VPS41-201ENST00000265745 PDX1P52945 283 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 PCBP4P57723 403 aaKnown RBP9.73□□□□□ -0.85
VPS41-201ENST00000265745 CCL7P80098 99 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 GALNT2Q10471 571 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 SPIDRQ14159 915 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 PTPRRQ15256 657 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 HADHQ16836 314 aaKnown RBP9.73□□□□□ -0.85
VPS41-201ENST00000265745 ARMC12Q5T9G4 340 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 HSD11B1LQ7Z5J1 315 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 TAF8Q7Z7C8 310 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 CPNE8Q86YQ8 564 aa9.73□□□□□ -0.85
VPS41-201ENST00000265745 FAM46DQ8NEK8 389 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms