RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 PCDH12Q9NPG4 1184 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 XPNPEP1Q9NQW7 623 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 MFHAS1Q9Y4C4 1052 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 PARP4Q9UKK3 1724 aaKnown RBP18.98■□□□□ 0.63
PTPRE-201ENST00000254667 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.98■□□□□ 0.63
PTPRE-201ENST00000254667 OR10H2O60403 315 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 STX11O75558 287 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 PRNPP04156 253 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 TSPAN19P0C672 248 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 SPAM1P38567 509 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 CPSF6Q16630 551 aaKnown RBP eCLIP18.98■□□□□ 0.63
PTPRE-201ENST00000254667 HECTD2Q5U5R9 776 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 TAPT1Q6NXT6 567 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 GCNT7Q6ZNI0 430 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 KIAA0408Q6ZU52 694 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 CENPIQ92674 756 aaPredicted RBP18.98■□□□□ 0.63
PTPRE-201ENST00000254667 PCED1BQ96HM7 432 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 SEMA6AQ9H2E6 1030 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 LRMDAQ9H2I8 198 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 ERVK-5Q9HDB9 667 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 ZNF446Q9NWS9 450 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 C3orf18Q9UK00 162 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 SPATA19Q7Z5L4 167 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 ERLEC1Q96DZ1 483 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 SLC28A3Q9HAS3 691 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 TRAF6Q9Y4K3 522 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 PIK3C2AO00443 1686 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 C2P06681 752 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 PBX3P40426 434 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 ST13P50502 369 aaKnown RBP18.98■□□□□ 0.63
PTPRE-201ENST00000254667 STX4Q12846 297 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 OR8H2Q8N162 312 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 OR4K2Q8NGD2 314 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 DNAJC1Q96KC8 554 aaKnown RBP18.98■□□□□ 0.63
PTPRE-201ENST00000254667 SDCBP2Q9H190 292 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 COG5Q9UP83 839 aa18.98■□□□□ 0.63
PTPRE-201ENST00000254667 R3HDM2Q9Y2K5 976 aaKnown RBP18.98■□□□□ 0.63
PTPRE-201ENST00000254667 MATN3O15232 486 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 ALG11Q2TAA5 492 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 DGKKQ5KSL6 1271 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 CUZD1Q86UP6 607 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 ZC3H7AQ8IWR0 971 aaKnown RBP18.97■□□□□ 0.63
PTPRE-201ENST00000254667 DNAJB14Q8TBM8 379 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 ARHGEF4Q9NR80 690 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 PAPOLBQ9NRJ5 636 aaKnown RBP18.97■□□□□ 0.63
PTPRE-201ENST00000254667 SLC9A8Q9Y2E8 581 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 SLC45A1Q9Y2W3 748 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 KNDC1Q76NI1 1749 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 CA12O43570 354 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 ATG13O75143 517 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 HIST1H2ABP04908 130 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 NR2F1P10589 423 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 HNRNPLP14866 589 aaKnown RBP eCLIP18.97■□□□□ 0.63
PTPRE-201ENST00000254667 AP1S1P61966 158 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 GNA12Q03113 381 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 CHSY3Q70JA7 882 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 HIST3H2AQ7L7L0 130 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 HIST1H2ACQ93077 130 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 FUBP3Q96I24 572 aaKnown RBP eCLIP18.97■□□□□ 0.63
PTPRE-201ENST00000254667 Q96MT0 163 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 TRIT1Q9H3H1 467 aaKnown RBP18.97■□□□□ 0.63
PTPRE-201ENST00000254667 PLLPQ9Y342 182 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 SLC20A2Q08357 652 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 DGUOKQ16854 277 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 CMC1Q7Z7K0 106 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 PANX1Q96RD7 426 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 TBC1D10AQ9BXI6 508 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 ZNF180Q9UJW8 692 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 COQ4Q9Y3A0 265 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 COL14A1Q05707 1796 aaKnown RBP18.97■□□□□ 0.63
PTPRE-201ENST00000254667 SERPINB7O75635 380 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 RBM23Q86U06 439 aaKnown RBP18.97■□□□□ 0.63
PTPRE-201ENST00000254667 FBXW8Q8N3Y1 598 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 LRRC57Q8N9N7 239 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 CPT1BQ92523 772 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 ABCC6O95255 1503 aa18.97■□□□□ 0.63
PTPRE-201ENST00000254667 A0A1W2PPM1 405 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 C2CD4BA6NLJ0 364 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 SPATA31D3P0C874 917 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 GSSP48637 474 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 NEDD8Q15843 81 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 SH3D19Q5HYK7 790 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 RHBDF2Q6PJF5 856 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 SPATA31D4Q6ZUB0 917 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 NOCTQ9UK39 431 aaKnown RBP18.96■□□□□ 0.63
PTPRE-201ENST00000254667 MRPS33Q9Y291 106 aaKnown RBP18.96■□□□□ 0.63
PTPRE-201ENST00000254667 IFT172Q9UG01 1749 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 KCNU1A8MYU2 1149 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 SLC22A3O75751 556 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 EPHA3P29320 983 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 DAOAP59103 153 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 SLC10A6Q3KNW5 377 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 CCDC92Q53HC0 331 aaPredicted RBP18.96■□□□□ 0.63
PTPRE-201ENST00000254667 VARS2Q5ST30 1063 aaKnown RBP18.96■□□□□ 0.63
PTPRE-201ENST00000254667 OTOP3Q7RTS5 596 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 C17orf64Q86WR6 236 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 PROSER1Q86XN7 944 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 DEPDC4Q8N2C3 294 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 GPR156Q8NFN8 814 aa18.96■□□□□ 0.63
PTPRE-201ENST00000254667 NLGN2Q8NFZ4 835 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms