RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 TNS4Q8IZW8 715 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 TTLQ8NG68 377 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 DENND1AQ8TEH3 1009 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 ZBTB10Q96DT7 871 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 KLF6Q99612 283 aaPredicted RBP13.66□□□□□ -0.22
LDLR-201ENST00000252444 SUV39H2Q9H5I1 410 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 MID1IP1Q9NPA3 183 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 HMGXB4Q9UGU5 601 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 PTGESO14684 152 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 SLC25A14O95258 325 aaPredicted RBP13.66□□□□□ -0.22
LDLR-201ENST00000252444 EPHX1P07099 455 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 HOXA9P31269 272 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 KRT20P35900 424 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 PRIM2P49643 509 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 WDR5P61964 334 aaKnown RBP13.66□□□□□ -0.22
LDLR-201ENST00000252444 RNF43Q68DV7 783 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 FBXL22Q6P050 247 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 ZFP1Q6P2D0 407 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 KBTBD6Q86V97 674 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 SAMD14Q8IZD0 417 aaPredicted RBP13.66□□□□□ -0.22
LDLR-201ENST00000252444 ZNF276Q8N554 614 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 METTL6Q8TCB7 284 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 DTX3LQ8TDB6 740 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 DLG3Q92796 817 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 TOP1MTQ969P6 601 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 CCM2Q9BSQ5 444 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 SPATA5L1Q9BVQ7 753 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 TRIT1Q9H3H1 467 aaKnown RBP13.66□□□□□ -0.22
LDLR-201ENST00000252444 ENTPD4Q9Y227 616 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 WASH4PA8MWX3 477 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 CSF2RAP15509 400 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 INTS11Q5TA45 600 aaKnown RBP13.66□□□□□ -0.22
LDLR-201ENST00000252444 SULT1C3Q6IMI6 304 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 KLHL23Q8NBE8 558 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 FAM174AQ8TBP5 190 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 ZNF75CPQ92670 426 aaPredicted RBP13.66□□□□□ -0.22
LDLR-201ENST00000252444 ZMAT2Q96NC0 199 aaKnown RBP13.66□□□□□ -0.22
LDLR-201ENST00000252444 TM6SF2Q9BZW4 377 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 OBP2AQ9NY56 170 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 ZNF711Q9Y462 761 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 CALCAP01258 141 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 CNPP09543 421 aaKnown RBP13.66□□□□□ -0.22
LDLR-201ENST00000252444 CHI3L1P36222 383 aaPredicted RBP13.66□□□□□ -0.22
LDLR-201ENST00000252444 PSMD8P48556 350 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 GRAMD1BQ3KR37 738 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 HDAC10Q969S8 669 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 LPIN3Q9BQK8 851 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 CEP41Q9BYV8 373 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 MRPS33Q9Y291 106 aaKnown RBP13.66□□□□□ -0.22
LDLR-201ENST00000252444 UQCRBP14927 111 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 CSKP41240 450 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 IRF8Q02556 426 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 MOGSQ13724 837 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 BMPR2Q13873 1038 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 C1orf220Q5T0J3 134 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 GPRIN3Q6ZVF9 776 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 CEP68Q76N32 757 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 RABEPKQ7Z6M1 372 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 TRABD2AQ86V40 505 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 ACTRT2Q8TDY3 377 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 NXPE3Q969Y0 559 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 SNX15Q9NRS6 342 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 ECM29Q5VYK3 1845 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 ATXN2Q99700 1313 aaKnown RBP13.65□□□□□ -0.22
LDLR-201ENST00000252444 BGNP21810 368 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 PTPN4P29074 926 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 AQP5P55064 265 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 KDSRQ06136 332 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 ACSM2AQ08AH3 577 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 TRMT5Q32P41 509 aaKnown RBP13.65□□□□□ -0.22
LDLR-201ENST00000252444 WLSQ5T9L3 541 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 ACSM2BQ68CK6 577 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 NRSN1Q8IZ57 195 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 LRRC15Q8TF66 581 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 SLC22A18Q96BI1 424 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 PIGVQ9NUD9 493 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 RNF19AQ9NV58 838 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 B2RBV5 119 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 NPHS1O60500 1241 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 DNAJA2O60884 412 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 CCDC166P0CW27 439 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 GCKP35557 465 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 ASMTP46597 345 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 RPIAP49247 311 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 GPR15P49685 360 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 CYP4F8P98187 520 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 SLC8B1Q6J4K2 584 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 CYP20A1Q6UW02 462 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 TMPRSS6Q8IU80 811 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 UBR7Q8N806 425 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 SMARCD2Q92925 531 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 RERGQ96A58 199 aaPredicted RBP13.65□□□□□ -0.22
LDLR-201ENST00000252444 OLFM3Q96PB7 478 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 SYNDIG1Q9H7V2 258 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 AVILO75366 819 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 ZSCAN5DPP0CG00 497 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 HNMTP50135 292 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 HECTD2Q5U5R9 776 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 RGS9BPQ6ZS82 235 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 CYS1Q717R9 158 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms