RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 GPR22Q99680 433 aa13.25□□□□□ -0.29
SLIRP-201ENST00000238688 LINC00597Q9H2U6 94 aa13.25□□□□□ -0.29
SLIRP-201ENST00000238688 ECT2Q9H8V3 914 aa13.25□□□□□ -0.29
SLIRP-201ENST00000238688 SPHK2Q9NRA0 654 aa13.25□□□□□ -0.29
SLIRP-201ENST00000238688 WNT6Q9Y6F9 365 aa13.25□□□□□ -0.29
SLIRP-201ENST00000238688 ABCA7Q8IZY2 2146 aa13.25□□□□□ -0.29
SLIRP-201ENST00000238688 ATXN2Q99700 1313 aaKnown RBP13.24□□□□□ -0.29
SLIRP-201ENST00000238688 C2orf81A6NN90 581 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 CHURC1-FNTBB4DL54 471 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 HOXC11O43248 304 aaPredicted RBP13.24□□□□□ -0.29
SLIRP-201ENST00000238688 HRO43593 1189 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 RFPL1O75677 317 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 ADH1CP00326 375 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 EGFP01133 1207 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 ASLP04424 464 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 OGNP20774 298 aaKnown RBP13.24□□□□□ -0.29
SLIRP-201ENST00000238688 FNTBP49356 437 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 SCNN1BP51168 640 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 GALK1P51570 392 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 KPNA2P52292 529 aaKnown RBP13.24□□□□□ -0.29
SLIRP-201ENST00000238688 MAXP61244 160 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 SNRPD1P62314 119 aaKnown RBP13.24□□□□□ -0.29
SLIRP-201ENST00000238688 RAD51Q06609 339 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 PDGFRLQ15198 375 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 PCSK7Q16549 785 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 HSP90AA5PQ58FG0 334 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 MRNIPQ6NTE8 343 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 NCEH1Q6PIU2 408 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 STRA8Q7Z7C7 330 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 KIAA0907Q7Z7F0 614 aaPredicted RBP13.24□□□□□ -0.29
SLIRP-201ENST00000238688 CPLX4Q7Z7G2 160 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 SRLQ86TD4 932 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 SYNPOQ8N3V7 929 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 PCDH20Q8N6Y1 951 aaKnown RBP13.24□□□□□ -0.29
SLIRP-201ENST00000238688 ANKS4BQ8N8V4 417 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 KDM1BQ8NB78 822 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 C2CD4AQ8NCU7 369 aaPredicted RBP13.24□□□□□ -0.29
SLIRP-201ENST00000238688 PTPRN2Q92932 1015 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 CCT8L2Q96SF2 557 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 TCF12Q99081 682 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 APOL2Q9BQE5 337 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 FAM107BQ9H098 131 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 NOD2Q9HC29 1040 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 POLR3BQ9NW08 1133 aaPredicted RBP13.24□□□□□ -0.29
SLIRP-201ENST00000238688 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.24□□□□□ -0.29
SLIRP-201ENST00000238688 LHX3Q9UBR4 397 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 SLC25A13Q9UJS0 675 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 SLC8A2Q9UPR5 921 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 PLLPQ9Y342 182 aa13.24□□□□□ -0.29
SLIRP-201ENST00000238688 ZNF106Q9H2Y7 1883 aaKnown RBP13.24□□□□□ -0.29
SLIRP-201ENST00000238688 A0A1W2PPM1 405 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 CCDC189A1A4V9 331 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 ANTXRLA6NF34 631 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 MUSKO15146 869 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 NFATC1O95644 943 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 CD160O95971 181 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 ERVK-10P10266 1014 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 NMBRP28336 390 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 MZF1P28698 734 aaPredicted RBP13.23□□□□□ -0.29
SLIRP-201ENST00000238688 CRABP2P29373 138 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 HOXA6P31267 233 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 RPA3P35244 121 aaPredicted RBP13.23□□□□□ -0.29
SLIRP-201ENST00000238688 SLC26A3P40879 764 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 ETV4P43268 484 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 PRAMEP78395 509 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 POU4F1Q01851 419 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 LMAN2Q12907 356 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 SRSF5Q13243 272 aaKnown RBP13.23□□□□□ -0.29
SLIRP-201ENST00000238688 CCDC153Q494R4 210 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 PREPLQ4J6C6 727 aaPredicted RBP13.23□□□□□ -0.29
SLIRP-201ENST00000238688 FSCBQ5H9T9 825 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 RNF187Q5TA31 235 aaPredicted RBP13.23□□□□□ -0.29
SLIRP-201ENST00000238688 NEPROQ6NW34 567 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 ZNF771Q7L3S4 317 aaPredicted RBP13.23□□□□□ -0.29
SLIRP-201ENST00000238688 AHI1Q8N157 1196 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 C4orf33Q8N1A6 199 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 MDM1Q8TC05 714 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 SREK1Q8WXA9 508 aaKnown RBP13.23□□□□□ -0.29
SLIRP-201ENST00000238688 RMDN1Q96DB5 314 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 TSPAN17Q96FV3 270 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 VPS39Q96JC1 886 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 BBS2Q9BXC9 721 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 CPEB1Q9BZB8 566 aaKnown RBP13.23□□□□□ -0.29
SLIRP-201ENST00000238688 ATP13A3Q9H7F0 1226 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 MAGEE1Q9HCI5 957 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 PARD6AQ9NPB6 346 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 DUS2Q9NX74 493 aaKnown RBP13.23□□□□□ -0.29
SLIRP-201ENST00000238688 FBXO10Q9UK96 956 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 SLC27A6Q9Y2P4 619 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 RAI2Q9Y5P3 530 aa13.23□□□□□ -0.29
SLIRP-201ENST00000238688 HMX2A2RU54 273 aa13.22□□□□□ -0.29
SLIRP-201ENST00000238688 ANKRD66B4E2M5 251 aa13.22□□□□□ -0.29
SLIRP-201ENST00000238688 H7C0S8 307 aa13.22□□□□□ -0.29
SLIRP-201ENST00000238688 EBAG9O00559 213 aa13.22□□□□□ -0.29
SLIRP-201ENST00000238688 HTRA2O43464 458 aaPredicted RBP13.22□□□□□ -0.29
SLIRP-201ENST00000238688 LDB2O43679 373 aa13.22□□□□□ -0.29
SLIRP-201ENST00000238688 FZD6O60353 706 aa13.22□□□□□ -0.29
SLIRP-201ENST00000238688 RPP40O75818 363 aaKnown RBP13.22□□□□□ -0.29
SLIRP-201ENST00000238688 SNUPNO95149 360 aaKnown RBP13.22□□□□□ -0.29
SLIRP-201ENST00000238688 VAPBO95292 243 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms