RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 USP46P62068 366 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 FAM153CQ494X1 144 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 IL27RAQ6UWB1 636 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 CLPTM1LQ96KA5 538 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 SYT4Q9H2B2 425 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 TMEM134Q9H6X4 195 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 AGPAT5Q9NUQ2 364 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 GPR75-ASB3A0A0A6YYF3 556 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 ILVBLA1L0T0 632 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 C1QTNF3-AMACRE9PGA6 284 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 FCER2P06734 321 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 GSTM3P21266 225 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 NRIP1P48552 1158 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 ZNF143P52747 638 aaPredicted RBP6.09□□□□□ -1.44
VPS13D-201ENST00000011700 VMACQ2NL98 169 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 CNPY1Q3B7I2 92 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 PARP15Q460N3 678 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 TAPT1Q6NXT6 567 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 ILDR2Q71H61 639 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 CNPPD1Q9BV87 410 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 PSMD13Q9UNM6 376 aa6.09□□□□□ -1.44
VPS13D-201ENST00000011700 NRCAMQ92823 1304 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 TRIOBPQ9H2D6 2365 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 PRORSD1PA6NEY8 169 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 TRIM38O00635 465 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 MRASO14807 208 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 PPEF2O14830 753 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 UBOX5O94941 541 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 GABRB2P47870 512 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 GSSP48637 474 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 ACOT2P49753 483 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 TBX4P57082 545 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 ANKRD26P1Q6NSI1 321 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 NECAB2Q7Z6G3 386 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 CLVS1Q8IUQ0 354 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-201ENST00000011700 MRPL41Q8IXM3 137 aaKnown RBP6.08□□□□□ -1.44
VPS13D-201ENST00000011700 CERS2Q96G23 380 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 MYO19Q96H55 970 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 FNDC11Q9BVV2 318 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 BCL2L14Q9BZR8 327 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 DENND2DQ9H6A0 471 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-201ENST00000011700 DBNDD1Q9H9R9 158 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 NDUFB5O43674 189 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 ATG12O94817 140 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 ITGB3P05106 788 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 ETV6P41212 452 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 ZNF844Q08AG5 666 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 N4BP2L1Q5TBK1 243 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-201ENST00000011700 GPRIN3Q6ZVF9 776 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 GALNT6Q8NCL4 622 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 TPD52L3Q96J77 140 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 SMPD3Q9NY59 655 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-201ENST00000011700 TTLL13PA6NNM8 815 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 PPP1R3GB7ZBB8 358 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 KERAO60938 352 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 FAM153BP0C7A2 387 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 FGFR2P21802 821 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 CBX3Q13185 183 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 MGAT5BQ3V5L5 792 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 ZNF311Q5JNZ3 666 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 TTI2Q6NXR4 508 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 KBTBD2Q8IY47 623 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 CENPSQ8N2Z9 138 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 NAT16Q8N8M0 369 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 ZC3H10Q96K80 434 aaKnown RBP6.08□□□□□ -1.44
VPS13D-201ENST00000011700 AP1S3Q96PC3 154 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 C12orf65Q9H3J6 166 aaKnown RBP6.08□□□□□ -1.44
VPS13D-201ENST00000011700 XKR8Q9H6D3 395 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 PHRF1Q9P1Y6 1649 aaKnown RBP6.08□□□□□ -1.44
VPS13D-201ENST00000011700 PLOD2O00469 737 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 FCHO1O14526 889 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 TNFRSF21O75509 655 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 SLC22A3O75751 556 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 CLPXO76031 633 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 PAPSS2O95340 614 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-201ENST00000011700 ADH1CP00326 375 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 CDC25AP30304 524 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 SLC6A4P31645 630 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 AP2S1P53680 142 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-201ENST00000011700 NME5P56597 212 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 TAS2R41P59536 307 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 SUZ12Q15022 739 aaKnown RBP6.08□□□□□ -1.44
VPS13D-201ENST00000011700 RASAL3Q86YV0 1011 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 KAT2AQ92830 837 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 SPATA17Q96L03 361 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 ORAI2Q96SN7 254 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 CCDC167Q9P0B6 97 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 HPSEQ9Y251 543 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 LOC100506127A0A0U1RQW1 187 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 CCNYL3P0C7X3 344 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 CACNB1Q02641 598 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-201ENST00000011700 ALFQ53S48 1182 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 ANGEL2Q5VTE6 544 aaKnown RBP6.08□□□□□ -1.44
VPS13D-201ENST00000011700 SLC27A1Q6PCB7 646 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 LRRC34Q8IZ02 419 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 PIH1D2Q8WWB5 315 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 EDC3Q96F86 508 aaKnown RBP6.08□□□□□ -1.44
VPS13D-201ENST00000011700 DNMT3LQ9UJW3 386 aa6.08□□□□□ -1.44
VPS13D-201ENST00000011700 FBXO9Q9UK97 447 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-201ENST00000011700 GTF2A1LQ9UNN4 478 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms