RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 PXNP49023 591 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 SERPINH1P50454 418 aaKnown RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 ARHGDIBP52566 201 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 FAM45BPQ6NSW5 357 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 NIPAL1Q6NVV3 410 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 MSANTD2Q6P1R3 559 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 C12orf40Q86WS4 652 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 LRRN4CLQ8ND94 238 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 OR2W6PQ8NHA6 318 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 ZBTB9Q96C00 473 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 EXOC2Q96KP1 924 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 ART5Q96L15 291 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 RPL10LQ96L21 214 aaKnown RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 FCRL2Q96LA5 508 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 EVLQ9UI08 416 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 KCND3Q9UK17 655 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 PCDHGC3Q9UN70 934 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 N4BP2Q86UW6 1770 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 TEX46H3BTG2 121 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 B4GALT5O43286 388 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 FKBP9O95302 570 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 PKMP14618 531 aaKnown RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 NOS3P29474 1203 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 AFF3P51826 1226 aaKnown RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 GPR17Q13304 367 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 POU6F1Q14863 301 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 GDPD4Q6W3E5 623 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 FKBP9P1Q75LS8 142 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 RASGRP2Q7LDG7 609 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 PCDH20Q8N6Y1 951 aaKnown RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 FAM174AQ8TBP5 190 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 SMPDL3BQ92485 455 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 HERC2P3Q9BVR0 1158 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 ALG2Q9H553 416 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 RMND5AQ9H871 391 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 SCN2BO60939 215 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 PSMD10O75832 226 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 MT-ND5P03915 603 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 HEXBP07686 556 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 SRFP11831 508 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 EPCAMP16422 314 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 CTPS1P17812 591 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 U2AF2P26368 475 aaKnown RBP eCLIP5.03□□□□□ -1.61e-6■■■□□ 14.9
SCN1A-218ENST00000640036 CASP4P49662 377 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 DEFB103AP81534 67 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 IRF8Q02556 426 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 ANKRD54Q6NXT1 300 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 FBXO42Q6P3S6 717 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 KRT74Q7RTS7 529 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 NUS1Q96E22 293 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 CYTH2Q99418 400 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 TCRBV5S4A2TA0A5A2 114 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 TRAFD1O14545 582 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 WDR47O94967 919 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 HEXAP06865 529 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 MYL2P10916 166 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 IMPDH2P12268 514 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 CASP1P29466 404 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 BUD31P41223 144 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 RBL2Q08999 1139 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 CDH17Q12864 832 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 SEC23AQ15436 765 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 PLA2G4EQ3MJ16 856 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 CEP78Q5JTW2 689 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 EEF1DP3Q658K8 133 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 BRAT1Q6PJG6 821 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 VGLL2Q8N8G2 317 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 ZNF563Q8TA94 476 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 RIN3Q8TB24 985 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 TATDN2Q93075 761 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 C12orf66Q96MD2 445 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 SH3GL3Q99963 347 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 TNKS2Q9H2K2 1166 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 ARHGAP28Q9P2N2 729 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 TUBGCP4Q9UGJ1 667 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 MRC1P22897 1456 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 A0A087WUV0 522 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 SDR42E2A6NKP2 422 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 NDUFA10O95299 355 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 SYNGR4O95473 234 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 RPL3P39023 403 aaKnown RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 ID4P47928 161 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 ACY1Q03154 408 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 C1QBPQ07021 282 aaKnown RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 GRAMD1BQ3KR37 738 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 CBWD6Q4V339 395 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 DEPDC1Q5TB30 811 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 Q7L0L9 218 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 PEG10Q86TG7 708 aaKnown RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 NXPE2Q96DL1 559 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 RERGLQ9H628 205 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 HEBP1Q9NRV9 189 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 SERINC1Q9NRX5 453 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 KRT84Q9NSB2 600 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 E5RJQ4 531 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 CST5P28325 142 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 HTR7P34969 479 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 HPCAL1P37235 193 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 HNF4AP41235 474 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 BCAP31P51572 246 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms