RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 DRD4P21917 467 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 LPOP22079 712 aaPredicted RBP16.91■□□□□ 0.3
CLN3-252ENST00000636907 SP100P23497 879 aaPredicted RBP16.91■□□□□ 0.3
CLN3-252ENST00000636907 PSMA3P25788 255 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 SERPINA4P29622 427 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 GMPRP36959 345 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 SLC6A11P48066 632 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 CCNHP51946 323 aaPredicted RBP16.91■□□□□ 0.3
CLN3-252ENST00000636907 RPL26P61254 145 aaKnown RBP16.91■□□□□ 0.3
CLN3-252ENST00000636907 PDGFRLQ15198 375 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 DPY19L3Q6ZPD9 716 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 LDB1Q86U70 411 aaPredicted RBP16.91■□□□□ 0.3
CLN3-252ENST00000636907 CILP2Q8IUL8 1156 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 ZNF473Q8WTR7 871 aaKnown RBP16.91■□□□□ 0.3
CLN3-252ENST00000636907 PLA2G2FQ9BZM2 168 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 CIPCQ9C0C6 399 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 HACD3Q9P035 362 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 SLC39A10Q9ULF5 831 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 RPL26L1Q9UNX3 145 aaKnown RBP16.91■□□□□ 0.3
CLN3-252ENST00000636907 SLC27A6Q9Y2P4 619 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 FAM95CA0A1B0GW59 222 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 VIMP08670 466 aaKnown RBP16.9■□□□□ 0.3
CLN3-252ENST00000636907 TAC1P20366 129 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 HADHAP40939 763 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 LEPRP48357 1165 aaKnown RBP16.9■□□□□ 0.3
CLN3-252ENST00000636907 FCHO2Q0JRZ9 810 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 MESP2Q0VG99 397 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 PDK4Q16654 411 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 PTPRNQ16849 979 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 CNSTQ6PJW8 725 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 ZSWIM9Q86XI8 627 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 MFSD6LQ8IWD5 586 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 LMNTD2Q8IXW0 634 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 PAF1Q8N7H5 531 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 CHST14Q8NCH0 376 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 WFIKKN2Q8TEU8 576 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 TUBGCP5Q96RT8 1024 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 VPS11Q9H270 941 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 ZDHHC6Q9H6R6 413 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 MAGEE1Q9HCI5 957 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 LMCD1Q9NZU5 365 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 ZNF711Q9Y462 761 aa16.9■□□□□ 0.3
CLN3-252ENST00000636907 DOCK8Q8NF50 2099 aa16.89■□□□□ 0.3
CLN3-252ENST00000636907 A0A0J9YYE9 177 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 WDR91A4D1P6 747 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 TTC34A8MYJ7 566 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 CD3EAPO15446 510 aaKnown RBP16.89■□□□□ 0.29
CLN3-252ENST00000636907 GLRA3O75311 464 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 POP4O95707 220 aaKnown RBP16.89■□□□□ 0.29
CLN3-252ENST00000636907 TRBC1P01850 177 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 MPOP05164 745 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 SAT1P21673 171 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 CSRP3P50461 194 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 GRM2Q14416 872 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 SEMA3AQ14563 771 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 USP10Q14694 798 aaKnown RBP16.89■□□□□ 0.29
CLN3-252ENST00000636907 CTC1Q2NKJ3 1217 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 EP400NLQ6ZTU2 488 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 GALNT7Q86SF2 657 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 SLC41A1Q8IVJ1 513 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 ARMC2Q8NEN0 867 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 OR2A12Q8NGT7 310 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 GPR150Q8NGU9 434 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 OR4L1Q8NH43 312 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 FRS2Q8WU20 508 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 E2F7Q96AV8 911 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 CPEB1Q9BZB8 566 aaKnown RBP16.89■□□□□ 0.29
CLN3-252ENST00000636907 BPIFA1Q9NP55 256 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 CLDND1Q9NY35 253 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 COL4A3Q01955 1670 aa16.89■□□□□ 0.29
CLN3-252ENST00000636907 TNRC18O15417 2968 aaPredicted RBP16.89■□□□□ 0.29
CLN3-252ENST00000636907 A0A096LPK6 155 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 ERICH4A6NGS2 130 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 STX7O15400 261 aaKnown RBP16.88■□□□□ 0.29
CLN3-252ENST00000636907 S1PR4O95977 384 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 ASLP04424 464 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 C2P06681 752 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 SRPRAP08240 638 aaKnown RBP16.88■□□□□ 0.29
CLN3-252ENST00000636907 DLDP09622 509 aaKnown RBP16.88■□□□□ 0.29
CLN3-252ENST00000636907 PGGT1BP53609 377 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 RAD51Q06609 339 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 GRAMD4Q6IC98 578 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 LYSMD3Q7Z3D4 306 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 CPLX4Q7Z7G2 160 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 PLPP6Q8IY26 295 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 GPATCH11Q8N954 259 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 EID2BQ96D98 161 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 ECHDC3Q96DC8 303 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 CABS1Q96KC9 395 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 KXD1Q9BQD3 176 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 GPR63Q9BZJ6 419 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 SUV39H2Q9H5I1 410 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 CATSPERZQ9NTU4 200 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 DCDC2Q9UHG0 476 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 FKBPLQ9UIM3 349 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 EMCNQ9ULC0 261 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 WASH3PC4AMC7 463 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 PRRT4C9JH25 899 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 PHGDHO43175 533 aaKnown RBP16.88■□□□□ 0.29
CLN3-252ENST00000636907 UGT2B4P06133 528 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms