RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 C11orf57Q6ZUT1 292 aaPredicted RBP14.58□□□□□ -0.08
CLN3-249ENST00000636685 ZNF761Q86XN6 746 aaPredicted RBP14.58□□□□□ -0.08
CLN3-249ENST00000636685 ESX1Q8N693 406 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 MARVELD3Q96A59 401 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 GDAP1L1Q96MZ0 367 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 NPY6RQ99463 290 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 DPYSL5Q9BPU6 564 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 ZPBPQ9BS86 351 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 CARS2Q9HA77 564 aaKnown RBP14.58□□□□□ -0.08
CLN3-249ENST00000636685 FBXO8Q9NRD0 319 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 LUZP4Q9P127 313 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 PDP2Q9P2J9 529 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 RCOR3Q9P2K3 495 aaPredicted RBP14.58□□□□□ -0.08
CLN3-249ENST00000636685 CROTQ9UKG9 612 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 CNTN6Q9UQ52 1028 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 ARHGAP10A1A4S6 786 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 KATNA1O75449 491 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 PIGNO95427 931 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 ERBB2P04626 1255 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 KELP23276 732 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 MAN1A1P33908 653 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 STAT1P42224 750 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 PPM1FP49593 454 aaPredicted RBP14.57□□□□□ -0.08
CLN3-249ENST00000636685 PGDP52209 483 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 GEMIN4P57678 1058 aaKnown RBP14.57□□□□□ -0.08
CLN3-249ENST00000636685 DEUP1Q05D60 604 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 RAD51Q06609 339 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 KRTAP21-3Q3LHN1 58 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 SLC30A9Q6PML9 568 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 PASD1Q8IV76 773 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 NAGSQ8N159 534 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 PELI3Q8N2H9 469 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 GSDMCQ9BYG8 508 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 SLC29A3Q9BZD2 475 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 GTPBP4Q9BZE4 634 aaKnown RBP14.57□□□□□ -0.08
CLN3-249ENST00000636685 TTYH3Q9C0H2 523 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 MAP10Q9P2G4 905 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 USP25Q9UHP3 1055 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 ST14Q9Y5Y6 855 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 NAV3Q8IVL0 2385 aa14.57□□□□□ -0.08
CLN3-249ENST00000636685 CXorf51AA0A1B0GTR3 108 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 TMCC1O94876 653 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 IGSF6O95976 241 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 FUCA1P04066 466 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 HOXC4P09017 264 aaPredicted RBP14.56□□□□□ -0.08
CLN3-249ENST00000636685 GNA15P30679 374 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 SUOXP51687 545 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 RNASE9P60153 205 aaKnown RBP14.56□□□□□ -0.08
CLN3-249ENST00000636685 SLC6A3Q01959 620 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 ILF3Q12906 894 aaKnown RBP eCLIP14.56□□□□□ -0.08
CLN3-249ENST00000636685 MAP7Q14244 749 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 NAA30Q147X3 362 aaPredicted RBP14.56□□□□□ -0.08
CLN3-249ENST00000636685 TSR1Q2NL82 804 aaKnown RBP14.56□□□□□ -0.08
CLN3-249ENST00000636685 SLC26A9Q7LBE3 791 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 ARHGAP22Q7Z5H3 698 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 APLFQ8IW19 511 aaPredicted RBP14.56□□□□□ -0.08
CLN3-249ENST00000636685 TP53INP2Q8IXH6 220 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 SLC34A3Q8N130 599 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 C5orf34Q96MH7 638 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 TBCBQ99426 244 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 UNKQ9C0B0 810 aaKnown RBP14.56□□□□□ -0.08
CLN3-249ENST00000636685 TWSG1Q9GZX9 223 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 DNAI1Q9UI46 699 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 SLC5A6Q9Y289 635 aa14.56□□□□□ -0.08
CLN3-249ENST00000636685 CCDC168Q8NDH2 2452 aa14.55□□□□□ -0.08
CLN3-249ENST00000636685 POLR1CO15160 346 aaPredicted RBP14.55□□□□□ -0.08
CLN3-249ENST00000636685 INPP4BO15327 924 aa14.55□□□□□ -0.08
CLN3-249ENST00000636685 TEX33O43247 280 aa14.55□□□□□ -0.08
CLN3-249ENST00000636685 HNRNPRO43390 633 aaKnown RBP14.55□□□□□ -0.08
CLN3-249ENST00000636685 RECQL5O94762 991 aaPredicted RBP14.55□□□□□ -0.08
CLN3-249ENST00000636685 ZNF28P17035 718 aa14.55□□□□□ -0.08
CLN3-249ENST00000636685 TRIM23P36406 574 aa14.55□□□□□ -0.08
CLN3-249ENST00000636685 MMP12P39900 470 aa14.55□□□□□ -0.08
CLN3-249ENST00000636685 NOP2P46087 812 aaKnown RBP14.55□□□□□ -0.08
CLN3-249ENST00000636685 PMS1P54277 932 aaKnown RBP14.55□□□□□ -0.08
CLN3-249ENST00000636685 FKBP3Q00688 224 aaKnown RBP14.55□□□□□ -0.08
CLN3-249ENST00000636685 DNM1Q05193 864 aaKnown RBP14.55□□□□□ -0.08
CLN3-249ENST00000636685 SEMA5AQ13591 1074 aa14.55□□□□□ -0.08
CLN3-249ENST00000636685 UGP2Q16851 508 aa14.55□□□□□ -0.08
CLN3-249ENST00000636685 ERAP2Q6P179 960 aa14.55□□□□□ -0.08
CLN3-249ENST00000636685 TTC13Q8NBP0 860 aa14.55□□□□□ -0.08
CLN3-249ENST00000636685 PGAP3Q96FM1 320 aaPredicted RBP14.55□□□□□ -0.08
CLN3-249ENST00000636685 AHCYL2Q96HN2 611 aaKnown RBP14.55□□□□□ -0.08
CLN3-249ENST00000636685 RRN3Q9NYV6 651 aa14.55□□□□□ -0.08
CLN3-249ENST00000636685 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.55□□□□□ -0.08
CLN3-249ENST00000636685 HPCAL4Q9UM19 191 aa14.55□□□□□ -0.08
CLN3-249ENST00000636685 MFHAS1Q9Y4C4 1052 aa14.55□□□□□ -0.08
CLN3-249ENST00000636685 PCNX1Q96RV3 2341 aa14.55□□□□□ -0.08
CLN3-249ENST00000636685 PIPSLA2A3N6 862 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 PMM2O15305 246 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 BUB1O43683 1085 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 ETFBP38117 255 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 GNPDA1P46926 289 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 RHOAP61586 193 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 GPLD1P80108 840 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 CHAF1BQ13112 559 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 RAPGEF1Q13905 1077 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 NR6A1Q15406 480 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 CPZQ66K79 652 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 C6orf15Q6UXA7 325 aaPredicted RBP14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms