RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 LMO4P61968 165 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 YWHAZP63104 245 aaKnown RBP2.81□□□□□ -1.96
SCN1A-208ENST00000625916 ICA1Q05084 483 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 TBL3Q12788 808 aaKnown RBP2.81□□□□□ -1.96
SCN1A-208ENST00000625916 GRIK2Q13002 908 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 MMEL1Q495T6 779 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 CBWD5Q5RIA9 395 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 CCNYL2Q5T2Q4 361 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 GPATCH4Q5T3I0 446 aaKnown RBP2.81□□□□□ -1.96
SCN1A-208ENST00000625916 SFMBT2Q5VUG0 894 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 XRRA1Q6P2D8 792 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 SLC36A4Q6YBV0 504 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 MOB3CQ70IA8 216 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 HERC6Q8IVU3 1022 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 RNF113BQ8IZP6 322 aaKnown RBP2.81□□□□□ -1.96
SCN1A-208ENST00000625916 SCCPDHQ8NBX0 429 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 KLHDC9Q8NEP7 349 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 DUSP19Q8WTR2 217 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 ZNF570Q96NI8 536 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 ATOH8Q96SQ7 321 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 UPF2Q9HAU5 1272 aaKnown RBP2.81□□□□□ -1.96
SCN1A-208ENST00000625916 SMYD2Q9NRG4 433 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 TMEM30AQ9NV96 361 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 HCFC1R1Q9NWW0 138 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 TINAGQ9UJW2 476 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 RCOR1Q9UKL0 485 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 SUFUQ9UMX1 484 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 CBY3A6NI87 242 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 CEP104O60308 925 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 KRT18P05783 430 aaKnown RBP2.8□□□□□ -1.96
SCN1A-208ENST00000625916 SLC2A4P14672 509 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 S1PR1P21453 382 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 CHRNB4P30926 498 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 GNALP38405 381 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 BLKP51451 505 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 LUMP51884 338 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-208ENST00000625916 IRX6P78412 446 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-208ENST00000625916 IRX1P78414 480 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-208ENST00000625916 TIGD6Q17RP2 521 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 SIRPB2Q5JXA9 342 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 TANGO2Q6ICL3 276 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 DENND1BQ6P3S1 775 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 SLC27A1Q6PCB7 646 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 C1orf87Q8N0U7 546 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 CPXM2Q8N436 756 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 AGBL3Q8NEM8 1001 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 PPM1EQ8WY54 764 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 CNOT9Q92600 299 aaKnown RBP2.8□□□□□ -1.96
SCN1A-208ENST00000625916 RUBCNQ92622 972 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 SNAPC3Q92966 411 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 EGFL8Q99944 293 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 HAUS8Q9BT25 410 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 POLR3CQ9BUI4 534 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-208ENST00000625916 SLC32A1Q9H598 525 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 MAP3K20Q9NYL2 800 aaKnown RBP2.8□□□□□ -1.96
SCN1A-208ENST00000625916 CHPF2Q9P2E5 772 aa2.8□□□□□ -1.96
SCN1A-208ENST00000625916 HHLA1C9JL84 531 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 WDR1O75083 606 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 CAND2O75155 1236 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 CAVIN2O95810 425 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 G6PDP11413 515 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 CST5P28325 142 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-208ENST00000625916 EIF2S3P41091 472 aaKnown RBP2.79□□□□□ -1.96
SCN1A-208ENST00000625916 AARSP49588 968 aaKnown RBP eCLIP2.79□□□□□ -1.96
SCN1A-208ENST00000625916 SUSD1Q6UWL2 747 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 ATF7IPQ6VMQ6 1270 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 TAOK1Q7L7X3 1001 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 CHERPQ8IWX8 916 aaKnown RBP2.79□□□□□ -1.96
SCN1A-208ENST00000625916 KIAA2013Q8IYS2 634 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 ZNF34Q8IZ26 560 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 TM9SF4Q92544 642 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 SH3KBP1Q96B97 665 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 ST6GAL2Q96JF0 529 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 CCDC136Q96JN2 1154 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 LRR1Q96L50 414 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 ELAC2Q9BQ52 826 aaKnown RBP2.79□□□□□ -1.96
SCN1A-208ENST00000625916 MXRA8Q9BRK3 442 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 SYT17Q9BSW7 474 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 NUF2Q9BZD4 464 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 WDR12Q9GZL7 423 aaKnown RBP2.79□□□□□ -1.96
SCN1A-208ENST00000625916 SLC7A10Q9NS82 523 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 ZKSCAN7Q9P0L1 754 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-208ENST00000625916 RNF215Q9Y6U7 377 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 CACNA1FO60840 1977 aa2.79□□□□□ -1.96
SCN1A-208ENST00000625916 C17orf113A0A1B0GUU1 675 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 GOLGA6L9A6NEM1 432 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 SMIM1B2RUZ4 78 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 STX16-NPEPL1H3BU86 382 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 STX16O14662 325 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 ANP32CO43423 234 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 KLK8O60259 260 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 PARNO95453 639 aaKnown RBP2.78□□□□□ -1.96
SCN1A-208ENST00000625916 MYL1P05976 194 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 MYOD1P15172 320 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 RXRAP19793 462 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 SP100P23497 879 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-208ENST00000625916 RRM1P23921 792 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 CSRP3P50461 194 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 DSCR10P59022 87 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 EEF1A1P68104 462 aaKnown RBP2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms