RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 MAGEA11P43364 429 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 SERPINB10P48595 397 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 IDH3AP50213 366 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 STAT5BP51692 787 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 SLC12A2P55011 1212 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 MERTKQ12866 999 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 SP140Q13342 867 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 HIST2H2ACQ16777 129 aaPredicted RBP10.26□□□□□ -0.77
VPS39-214ENST00000614932 ZNF181Q2M3W8 571 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 ZNF773Q6PK81 442 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 ARSKQ6UWY0 536 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 BBS12Q6ZW61 710 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 BEND5Q7L4P6 421 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 RIOX2Q8IUF8 465 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 DSELQ8IZU8 1212 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 CCDC185Q8N715 623 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 BTN2A3PQ96KV6 586 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 MFSD14AQ96MC6 490 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 TTYH2Q9BSA4 534 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 NTPCRQ9BSD7 190 aaKnown RBP10.26□□□□□ -0.77
VPS39-214ENST00000614932 LHPPQ9H008 270 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 PDGFCQ9NRA1 345 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 ARHGAP28Q9P2N2 729 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 EIF3KQ9UBQ5 218 aaKnown RBP10.26□□□□□ -0.77
VPS39-214ENST00000614932 FAM8A1Q9UBU6 413 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 ENOPH1Q9UHY7 261 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 SNX7Q9UNH6 387 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 F8W810 466 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 H0Y858 1186 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 LINC01387J3KSC0 135 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 SOCS2O14508 198 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 ABCB7O75027 752 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 CDK14O94921 469 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 TMEM191BP0C7N4 346 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 CYP2C8P10632 490 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 PSKH1P11801 424 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 BMP1P13497 986 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 CDH5P33151 784 aaPredicted RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 SERPINB5P36952 375 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 HTR3AP46098 478 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 NPY2RP49146 381 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 RUNX1T1Q06455 604 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 ENPEPQ07075 957 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 SCRN3Q0VDG4 424 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 KLF10Q13118 480 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 CAPSQ13938 189 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 BRDTQ58F21 947 aaPredicted RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 XRRA1Q6P2D8 792 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 TMEM270Q6UE05 265 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 SCARA5Q6ZMJ2 495 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 CHSY3Q70JA7 882 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 C11orf96Q7Z7L8 435 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 PACRGLQ8N7B6 248 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 PIK3C3Q8NEB9 887 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 RHOXF1Q8NHV9 184 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 MCRS1Q96EZ8 462 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 ST6GAL2Q96JF0 529 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 DMRTB1Q96MA1 342 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 SPOCK3Q9BQ16 436 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 APOBEC3GQ9HC16 384 aaKnown RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 MCCC2Q9HCC0 563 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 C1orf112Q9NSG2 853 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 GLTPQ9NZD2 209 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 FNIP2Q9P278 1114 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 SLCO3A1Q9UIG8 710 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 MAN2B2Q9Y2E5 1009 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 BANF1O75531 89 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 RALBP11234 206 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 CKMT2P17540 419 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 ATF7P17544 494 aaPredicted RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 CBLP22681 906 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 HSD17B2P37059 387 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 C1QBPQ07021 282 aaKnown RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 MRPL28Q13084 256 aaKnown RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 KRR1Q13601 381 aaKnown RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 DGUOKQ16854 277 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 TBRG1Q3YBR2 411 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 SLC36A3Q495N2 470 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 GARNL3Q5VVW2 1013 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 PM20D1Q6GTS8 502 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 KCNT2Q6UVM3 1135 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 ARCQ7LC44 396 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 RHPN2Q8IUC4 686 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 THNSL1Q8IYQ7 743 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 RNF148Q8N7C7 305 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 RDM1Q8NG50 284 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 ZSCAN18Q8TBC5 510 aaPredicted RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 LPGAT1Q92604 370 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 CIDECQ96AQ7 238 aaPredicted RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 FKBP10Q96AY3 582 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 ZNF778Q96MU6 729 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 GHITMQ9H3K2 345 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 DHX33Q9H6R0 707 aaKnown RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 NOL11Q9H8H0 719 aaKnown RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 SPC25Q9HBM1 224 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 CD320Q9NPF0 282 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 ANAPC7Q9UJX3 599 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 USTQ9Y2C2 406 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 MAFBQ9Y5Q3 323 aaPredicted RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 SNX8Q9Y5X2 465 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms