RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 PCOLCE2Q9UKZ9 415 aa19.42■□□□□ 0.7
UPF1-212ENST00000601689 APOBEC2Q9Y235 224 aaKnown RBP19.42■□□□□ 0.7
UPF1-212ENST00000601689 CHKBQ9Y259 395 aa19.42■□□□□ 0.7
UPF1-212ENST00000601689 PPIL1Q9Y3C6 166 aa19.42■□□□□ 0.7
UPF1-212ENST00000601689 SPTY2D1-AS1A0A0U1RR47 76 aa19.41■□□□□ 0.7
UPF1-212ENST00000601689 CACNB4O00305 520 aaPredicted RBP19.41■□□□□ 0.7
UPF1-212ENST00000601689 RECQL5O94762 991 aaPredicted RBP19.41■□□□□ 0.7
UPF1-212ENST00000601689 TRIM16O95361 564 aa19.41■□□□□ 0.7
UPF1-212ENST00000601689 FTCDO95954 541 aa19.41■□□□□ 0.7
UPF1-212ENST00000601689 PECAM1P16284 738 aaPredicted RBP19.41■□□□□ 0.7
UPF1-212ENST00000601689 PFN3P60673 137 aa19.41■□□□□ 0.7
UPF1-212ENST00000601689 RALGDSQ12967 914 aa19.41■□□□□ 0.7
UPF1-212ENST00000601689 ZBTB17Q13105 803 aa19.41■□□□□ 0.7
UPF1-212ENST00000601689 PRKD1Q15139 912 aaPredicted RBP19.41■□□□□ 0.7
UPF1-212ENST00000601689 IRF4Q15306 451 aa19.41■□□□□ 0.7
UPF1-212ENST00000601689 ZNF662Q6ZS27 426 aa19.41■□□□□ 0.7
UPF1-212ENST00000601689 CDKL3Q8IVW4 592 aaPredicted RBP19.41■□□□□ 0.7
UPF1-212ENST00000601689 ARRDC2Q8TBH0 407 aa19.41■□□□□ 0.7
UPF1-212ENST00000601689 CCHCR1Q8TD31 782 aa19.41■□□□□ 0.7
UPF1-212ENST00000601689 SAP25Q8TEE9 199 aa19.41■□□□□ 0.7
UPF1-212ENST00000601689 HTR3CQ8WXA8 447 aa19.41■□□□□ 0.7
UPF1-212ENST00000601689 MLPHQ9BV36 600 aaPredicted RBP19.41■□□□□ 0.7
UPF1-212ENST00000601689 FTSJ1Q9UET6 329 aa19.41■□□□□ 0.7
UPF1-212ENST00000601689 DNAH14Q0VDD8 3507 aa19.41■□□□□ 0.7
UPF1-212ENST00000601689 A0A0J9YYE9 177 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 FZD6O60353 706 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 HEXIM1O94992 359 aaKnown RBP19.4■□□□□ 0.7
UPF1-212ENST00000601689 TRBC1P01850 177 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 PCCBP05166 539 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 PYGLP06737 847 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 ADRB1P08588 477 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 CTPS1P17812 591 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 IGFALSP35858 605 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 SEMG2Q02383 582 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 NOMO1Q15155 1222 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 SLC14A2Q15849 920 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 WSCD2Q2TBF2 565 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 N4BP2L1Q5TBK1 243 aaPredicted RBP19.4■□□□□ 0.7
UPF1-212ENST00000601689 ITPRIPL1Q6GPH6 555 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 MACC1Q6ZN28 852 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 GATAD2AQ86YP4 633 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 RAVER1Q8IY67 606 aaKnown RBP19.4■□□□□ 0.7
UPF1-212ENST00000601689 LPCAT1Q8NF37 534 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 PIH1D2Q8WWB5 315 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 NUS1Q96E22 293 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 TEKT5Q96M29 485 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 PPP1R2P1Q96PQ5 205 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 MCCC1Q96RQ3 725 aaPredicted RBP19.4■□□□□ 0.7
UPF1-212ENST00000601689 CEP41Q9BYV8 373 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 SLC13A1Q9BZW2 595 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 GLOD4Q9HC38 313 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 LZTFL1Q9NQ48 299 aa19.4■□□□□ 0.7
UPF1-212ENST00000601689 GOLGA6CA6NDK9 693 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 GOLGA6BA6NDN3 693 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 ANKRD66B4E2M5 251 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 GIPC1O14908 333 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 TNFSF14O43557 240 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 LDOC1O95751 146 aaPredicted RBP19.39■□□□□ 0.69
UPF1-212ENST00000601689 CSF2P04141 144 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 PDHA1P08559 390 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 GOLGA6DP0CG33 693 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 PYGMP11217 842 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 TSHRP16473 764 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 PTPN3P26045 913 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 EIF3EP60228 445 aaKnown RBP19.39■□□□□ 0.69
UPF1-212ENST00000601689 OTUD4Q01804 1114 aaKnown RBP19.39■□□□□ 0.69
UPF1-212ENST00000601689 PPARDQ03181 441 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 NIPAL4Q0D2K0 466 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 BNIP3Q12983 259 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 INPP5AQ14642 412 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 FAXCQ5TGI0 409 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 DARS2Q6PI48 645 aaKnown RBP19.39■□□□□ 0.69
UPF1-212ENST00000601689 GLRX5Q86SX6 157 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 SLC22A18ASQ8N1D0 253 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 CNTD1Q8N815 330 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 ACTL9Q8TC94 416 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 IMP4Q96G21 291 aaKnown RBP19.39■□□□□ 0.69
UPF1-212ENST00000601689 HES6Q96HZ4 224 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 CAMK1GQ96NX5 476 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 QKIQ96PU8 341 aaKnown RBP eCLIP19.39■□□□□ 0.69
UPF1-212ENST00000601689 RBM15Q96T37 977 aaKnown RBP eCLIP19.39■□□□□ 0.69
UPF1-212ENST00000601689 APOOQ9BUR5 198 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 DUSP23Q9BVJ7 150 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 MBNL1Q9NR56 388 aaKnown RBP19.39■□□□□ 0.69
UPF1-212ENST00000601689 GOLGA6AQ9NYA3 693 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 SPASTQ9UBP0 616 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 PACSIN2Q9UNF0 486 aaPredicted RBP19.39■□□□□ 0.69
UPF1-212ENST00000601689 CAPN6Q9Y6Q1 641 aa19.39■□□□□ 0.69
UPF1-212ENST00000601689 CAPN8A6NHC0 703 aa19.38■□□□□ 0.69
UPF1-212ENST00000601689 NPIPB15A6NHN6 443 aaPredicted RBP19.38■□□□□ 0.69
UPF1-212ENST00000601689 RBP3P10745 1247 aa19.38■□□□□ 0.69
UPF1-212ENST00000601689 CTSEP14091 401 aa19.38■□□□□ 0.69
UPF1-212ENST00000601689 JUNDP17535 347 aa19.38■□□□□ 0.69
UPF1-212ENST00000601689 HNF1BP35680 557 aa19.38■□□□□ 0.69
UPF1-212ENST00000601689 SKOR1P84550 965 aa19.38■□□□□ 0.69
UPF1-212ENST00000601689 ADCY2Q08462 1091 aa19.38■□□□□ 0.69
UPF1-212ENST00000601689 PRPSAP1Q14558 356 aa19.38■□□□□ 0.69
UPF1-212ENST00000601689 RPS6KA1Q15418 735 aa19.38■□□□□ 0.69
UPF1-212ENST00000601689 CNGA3Q16281 694 aa19.38■□□□□ 0.69
UPF1-212ENST00000601689 ENPP7Q6UWV6 458 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms