RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 GFM1Q96RP9 751 aaKnown RBP9.83□□□□□ -0.84
VRK3-216ENST00000599342 NUDCD1Q96RS6 583 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 RBM15Q96T37 977 aaKnown RBP eCLIP9.83□□□□□ -0.84
VRK3-216ENST00000599342 MGME1Q9BQP7 344 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 NUP85Q9BW27 656 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 DPH1Q9BZG8 443 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 STRADBQ9C0K7 418 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 THAP2Q9H0W7 228 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 ASCL3Q9NQ33 180 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 KCTD5Q9NXV2 234 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 B4GALT6Q9UBX8 382 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 PCDHGC4Q9Y5F7 938 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 PCDHGA8Q9Y5G5 932 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 SYCE3A1L190 88 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 PRSS38A1L453 326 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 TTC24A2A3L6 582 aaPredicted RBP9.82□□□□□ -0.84
VRK3-216ENST00000599342 GOLGA6CA6NDK9 693 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 GOLGA6BA6NDN3 693 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 TMEM202A6NGA9 273 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 B4DGG1 531 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 D6RAR5 112 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 GOLGA6L19H0YKK7 550 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 TMX2-CTNND1H3BSU7 103 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 TK2O00142 265 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 MYO1FO00160 1098 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 NTN3O00634 580 aaPredicted RBP9.82□□□□□ -0.84
VRK3-216ENST00000599342 TNFRSF10CO14798 259 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 ATXN7O15265 892 aaPredicted RBP9.82□□□□□ -0.84
VRK3-216ENST00000599342 KLK10O43240 276 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 HTRA2O43464 458 aaPredicted RBP9.82□□□□□ -0.84
VRK3-216ENST00000599342 MAFKO60675 156 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 TNFSF15O95150 251 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 RPLP0P05388 317 aaKnown RBP9.82□□□□□ -0.84
VRK3-216ENST00000599342 HOXC4P09017 264 aaPredicted RBP9.82□□□□□ -0.84
VRK3-216ENST00000599342 GOLGA6DP0CG33 693 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 RARAP10276 462 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 MYCLP1P12525 358 aaPredicted RBP9.82□□□□□ -0.84
VRK3-216ENST00000599342 TCF4P15884 667 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 VIPR1P32241 457 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 MLLT3P42568 568 aaPredicted RBP9.82□□□□□ -0.84
VRK3-216ENST00000599342 MMP13P45452 471 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 ZBED6P86452 979 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 FANCCQ00597 558 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 EIF3IQ13347 325 aaKnown RBP9.82□□□□□ -0.84
VRK3-216ENST00000599342 ARHGEF7Q14155 803 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 CNGA3Q16281 694 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 HADHQ16836 314 aaKnown RBP9.82□□□□□ -0.84
VRK3-216ENST00000599342 RALGPS1Q5JS13 557 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 MARC1Q5VT66 337 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 HGSNATQ68CP4 663 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 DENND2CQ68D51 928 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 PNCKQ6P2M8 343 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 USP45Q70EL2 814 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 LUZP1Q86V48 1076 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 NIPA2Q8N8Q9 360 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 FAM46DQ8NEK8 389 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 KIAA1524Q8TCG1 905 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 CPLX3Q8WVH0 158 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 OR1E3Q8WZA6 343 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 SLC39A7Q92504 469 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 SPOCK2Q92563 424 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 LIN37Q96GY3 246 aaPredicted RBP9.82□□□□□ -0.84
VRK3-216ENST00000599342 BTBD6Q96KE9 485 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 TMEM74Q96NL1 305 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 FUCA2Q9BTY2 467 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 DPEP2Q9H4A9 486 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 NOD2Q9HC29 1040 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 CBX8Q9HC52 389 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 PCDH18Q9HCL0 1135 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 EPB41L5Q9HCM4 733 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 CYP4F12Q9HCS2 524 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 FGF22Q9HCT0 170 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 MRPL40Q9NQ50 206 aaKnown RBP9.82□□□□□ -0.84
VRK3-216ENST00000599342 PHPT1Q9NRX4 125 aaPredicted RBP9.82□□□□□ -0.84
VRK3-216ENST00000599342 ETNK2Q9NVF9 386 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 HAUS2Q9NVX0 235 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 GOLGA6AQ9NYA3 693 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 RCOR3Q9P2K3 495 aaPredicted RBP9.82□□□□□ -0.84
VRK3-216ENST00000599342 PHTF1Q9UMS5 762 aa9.82□□□□□ -0.84
VRK3-216ENST00000599342 ANKRD11Q6UB99 2663 aaPredicted RBP9.81□□□□□ -0.84
VRK3-216ENST00000599342 CDRT15L2A8MXV6 281 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 PSMD11O00231 422 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 PLD2O14939 933 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 HEXIM1O94992 359 aaKnown RBP9.81□□□□□ -0.84
VRK3-216ENST00000599342 PEX11BO96011 259 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 CYP1A2P05177 515 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 ITGA2BP08514 1039 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 KRT10P13645 584 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 GLB1P16278 677 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 GM2AP17900 193 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 CR2P20023 1033 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 GJC1P36383 396 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 TRIM23P36406 574 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 PDX1P52945 283 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 INHBCP55103 352 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 MAXP61244 160 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 CCL7P80098 99 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 SLC25A11Q02978 314 aaKnown RBP9.81□□□□□ -0.84
VRK3-216ENST00000599342 ITKQ08881 620 aa9.81□□□□□ -0.84
VRK3-216ENST00000599342 C19orf57Q0VDD7 668 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms