RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ARHGEF3Q9NR81 526 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 RAD18Q9NS91 495 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 NLE1Q9NVX2 485 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-209ENST00000597423 HCN2Q9UL51 889 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 ZNF711Q9Y462 761 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 C1orf232A0A0U1RR37 186 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 ZCWPW2A0A1B0GU75 182 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 FAM159BA6NKW6 160 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 POC1B-GALNT4F8VUJ3 575 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 PFDN6O15212 129 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 SLC7A4O43246 635 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 CDH16O75309 829 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 RPP40O75818 363 aaKnown RBP15.28■□□□□ 0.04
TRIM28-209ENST00000597423 SASH3O75995 380 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 VAPBO95292 243 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 SHBGP04278 402 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 CTSLP07711 333 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 INHBAP08476 426 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 PIRTP0C851 137 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 HOXB2P14652 356 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 TIMP2P16035 220 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 ZNF30P17039 623 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 C5AR1P21730 350 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 HMGCLP35914 325 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 WASP42768 502 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 ZNF844Q08AG5 666 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 ELP6Q0PNE2 266 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 RASA2Q15283 850 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 ZNF776Q68DI1 518 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-209ENST00000597423 SDCCAG8Q86SQ7 713 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-209ENST00000597423 TDRPQ86YL5 185 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 MMAAQ8IVH4 418 aaKnown RBP15.28■□□□□ 0.04
TRIM28-209ENST00000597423 PPM1NQ8N819 430 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 IL17RCQ8NAC3 791 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 TXNDC5Q8NBS9 432 aaKnown RBP15.28■□□□□ 0.04
TRIM28-209ENST00000597423 OR6P1Q8NGX9 317 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 OR2W6PQ8NHA6 318 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 MCCC1Q96RQ3 725 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-209ENST00000597423 FAM167BQ9BTA0 163 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 HDAC8Q9BY41 377 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 CENPHQ9H3R5 247 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 TREX1Q9NSU2 369 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 ZFATQ9P243 1243 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 SCML1Q9UN30 329 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 NDRG2Q9UN36 371 aaKnown RBP15.28■□□□□ 0.04
TRIM28-209ENST00000597423 SPO11Q9Y5K1 396 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 ARL5AQ9Y689 179 aa15.28■□□□□ 0.04
TRIM28-209ENST00000597423 RGSL1A5PLK6 1076 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 RGS16O15492 202 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-209ENST00000597423 ALPIP09923 528 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 PSMA3P25788 255 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 VIPR1P32241 457 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 SERPINB9P50453 376 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 STARD6P59095 220 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 ACVR1Q04771 509 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 ZBTB16Q05516 673 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 CCINQ13939 588 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 KBTBD12Q3ZCT8 623 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 MRNIPQ6NTE8 343 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 NEPROQ6NW34 567 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 ERN2Q76MJ5 926 aaKnown RBP15.27■□□□□ 0.04
TRIM28-209ENST00000597423 KCNMB4Q86W47 210 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 SLC26A11Q86WA9 606 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 RASSF3Q86WH2 238 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 RAVER1Q8IY67 606 aaKnown RBP15.27■□□□□ 0.04
TRIM28-209ENST00000597423 MDGA1Q8NFP4 955 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 OR4K2Q8NGD2 314 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 SCG3Q8WXD2 468 aaKnown RBP15.27■□□□□ 0.04
TRIM28-209ENST00000597423 EZH1Q92800 747 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-209ENST00000597423 HDAC10Q969S8 669 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 ASB2Q96Q27 587 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 CA14Q9ULX7 337 aa15.27■□□□□ 0.04
TRIM28-209ENST00000597423 REV3LO60673 3130 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 IQANK1A0A1B0GTG1 560 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 CCDC78A2IDD5 438 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 GOLGA8KD6RF30 607 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 RNF40O75150 1001 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 DNTTP04053 509 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 ERVK-10P10266 1014 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 BMP1P13497 986 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 CNTFP26441 200 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 PPARGP37231 505 aaPredicted RBP15.26■□□□□ 0.03
TRIM28-209ENST00000597423 PSMD8P48556 350 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 NEK3P51956 506 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 ZNF140P52738 457 aaPredicted RBP15.26■□□□□ 0.03
TRIM28-209ENST00000597423 SATB1Q01826 763 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 CST6Q15828 149 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 HSP90AA5PQ58FG0 334 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 GRTP1Q5TC63 336 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 TRMT10BQ6PF06 316 aaKnown RBP15.26■□□□□ 0.03
TRIM28-209ENST00000597423 CRTC1Q6UUV9 634 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 LYSMD3Q7Z3D4 306 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 CBARPQ8N350 705 aaPredicted RBP15.26■□□□□ 0.03
TRIM28-209ENST00000597423 TTC30BQ8N4P2 665 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 RPLP0P6Q8NHW5 317 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 SLC44A1Q8WWI5 657 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 PBXIP1Q96AQ6 731 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 PGM2Q96G03 612 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 CDKN2AIPNLQ96HQ2 116 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 SGSM3Q96HU1 749 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms