RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 BCL2L1Q07817 233 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 MGAT5Q09328 741 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 MTAPQ13126 283 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 NAB1Q13506 487 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 GALNT3Q14435 633 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 TTMPQ5BVD1 217 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 ARMC12Q5T9G4 340 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 TRMT10BQ6PF06 316 aaKnown RBP13.53□□□□□ -0.24
VMP1-217ENST00000593168 ADGRD1Q6QNK2 874 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 CES3Q6UWW8 571 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 NUDT18Q6ZVK8 323 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 LRRC6Q86X45 466 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 CAMK1DQ8IU85 385 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 ZNF687Q8N1G0 1237 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 RYBPQ8N488 228 aaPredicted RBP13.53□□□□□ -0.24
VMP1-217ENST00000593168 CYB5D2Q8WUJ1 264 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 UCMAQ8WVF2 138 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 SLC44A1Q8WWI5 657 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 MFSD3Q96ES6 412 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 CERS2Q96G23 380 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 ZNF641Q96N77 438 aaPredicted RBP13.53□□□□□ -0.24
VMP1-217ENST00000593168 NELL2Q99435 816 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 RTKNQ9BST9 563 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 CENPHQ9H3R5 247 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 TRPV5Q9NQA5 729 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 TREX1Q9NSU2 369 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 PLA2G4CQ9UP65 541 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 TPRP12270 2363 aaKnown RBP13.53□□□□□ -0.24
VMP1-217ENST00000593168 ACACBO00763 2458 aa13.53□□□□□ -0.24
VMP1-217ENST00000593168 SMIM23A6NLE4 172 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 LDB2O43679 373 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 RNF40O75150 1001 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 TDGF1P13385 188 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 SERPINA4P29622 427 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 ATP5DP30049 168 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 GRIA2P42262 883 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 GRIA4P48058 902 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 CCNHP51946 323 aaPredicted RBP13.52□□□□□ -0.25
VMP1-217ENST00000593168 QPCTQ16769 361 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 TSTD2Q5T7W7 516 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 ZNF852Q6ZMS4 543 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 DPY19L3Q6ZPD9 716 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 MARK2Q7KZI7 788 aaKnown RBP13.52□□□□□ -0.25
VMP1-217ENST00000593168 SLC26A11Q86WA9 606 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 PPM1NQ8N819 430 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 OR2A12Q8NGT7 310 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 CSGALNACT1Q8TDX6 532 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 PIH1D2Q8WWB5 315 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 SORCS1Q8WY21 1168 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 VOPP1Q96AW1 172 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 TLCD1Q96CP7 247 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 ECHDC3Q96DC8 303 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 CHFRQ96EP1 664 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 LRIG1Q96JA1 1093 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 ZNF778Q96MU6 729 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 SRPK1Q96SB4 655 aaKnown RBP13.52□□□□□ -0.25
VMP1-217ENST00000593168 PAFAH2Q99487 392 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 SUV39H2Q9H5I1 410 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 SMYD2Q9NRG4 433 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 HACD3Q9P035 362 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 BCCIPQ9P287 314 aaKnown RBP eCLIP13.52□□□□□ -0.25
VMP1-217ENST00000593168 PSMC3IPQ9P2W1 217 aaPredicted RBP13.52□□□□□ -0.25
VMP1-217ENST00000593168 ZNF180Q9UJW8 692 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 PCDHB9Q9Y5E1 797 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 IKBKGQ9Y6K9 419 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 ANKRD36A6QL64 1941 aa13.52□□□□□ -0.25
VMP1-217ENST00000593168 TBC1D3BA6NDS4 549 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 CXorf49A8MYA2 514 aaPredicted RBP13.51□□□□□ -0.25
VMP1-217ENST00000593168 TTC34A8MYJ7 566 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 KAT7O95251 611 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 CRTAMO95727 393 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 APODP05090 189 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 INHBAP08476 426 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 PAMP19021 973 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 PSMA3P25788 255 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 ACVR1Q04771 509 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 KDSRQ06136 332 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 SPEM2Q0P670 501 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 MESP2Q0VG99 397 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 SEPT6Q14141 434 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 EFTUD2Q15029 972 aaKnown RBP eCLIP13.51□□□□□ -0.25
VMP1-217ENST00000593168 E2F5Q15329 346 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 LPAL2Q16609 132 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 LGSNQ5TDP6 509 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 PDPK2PQ6A1A2 396 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 KIAA0930Q6ICG6 404 aaPredicted RBP13.51□□□□□ -0.25
VMP1-217ENST00000593168 ESRP1Q6NXG1 681 aaKnown RBP13.51□□□□□ -0.25
VMP1-217ENST00000593168 Q6ZVU0 165 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 CTAGE3PQ8IX95 158 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 UNC5BQ8IZJ1 945 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 LPCAT1Q8NF37 534 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 OR6K2Q8NGY2 324 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 TTC8Q8TAM2 541 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 BLOC1S5Q8TDH9 187 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 STYXQ8WUJ0 223 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 PDCD6IPQ8WUM4 868 aaKnown RBP13.51□□□□□ -0.25
VMP1-217ENST00000593168 DCAKDQ8WVC6 231 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 PTPRN2Q92932 1015 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 HEPHQ9BQS7 1158 aa13.51□□□□□ -0.25
VMP1-217ENST00000593168 TRABDQ9H4I3 376 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms