RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 C1orf61Q13536 156 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 NR0B2Q15466 257 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 SPA17Q15506 151 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 LRRC38Q5VT99 294 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 DENND2CQ68D51 928 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 ESRP1Q6NXG1 681 aaKnown RBP12.42□□□□□ -0.42
SS18-225ENST00000585121 RD3Q7Z3Z2 195 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 VSIG1Q86XK7 387 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 PROSER1Q86XN7 944 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 RBFAQ8N0V3 343 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 SDR16C5Q8N3Y7 309 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 RAPGEF5Q92565 580 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 MAML1Q92585 1016 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 TSACCQ96A04 125 aaPredicted RBP12.42□□□□□ -0.42
SS18-225ENST00000585121 LRRC61Q9BV99 259 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 DDX56Q9NY93 547 aaKnown RBP12.42□□□□□ -0.42
SS18-225ENST00000585121 CLCA2Q9UQC9 943 aa12.42□□□□□ -0.42
SS18-225ENST00000585121 CPED1A4D0V7 1026 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 APOL1O14791 398 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 HEXIM1O94992 359 aaKnown RBP12.41□□□□□ -0.42
SS18-225ENST00000585121 MAP3K6O95382 1288 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 MT-CO3P00414 261 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 KRT1P04264 644 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 HOXC4P09017 264 aaPredicted RBP12.41□□□□□ -0.42
SS18-225ENST00000585121 TNNT1P13805 278 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 TSHRP16473 764 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 NOP2P46087 812 aaKnown RBP12.41□□□□□ -0.42
SS18-225ENST00000585121 KIAA1024LP59773 190 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 INSM1Q01101 510 aaPredicted RBP12.41□□□□□ -0.42
SS18-225ENST00000585121 CYP4F3Q08477 520 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 CAMK2BQ13554 666 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 GKN2Q86XP6 184 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 RHOT1Q8IXI2 618 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 CCDC13Q8IYE1 715 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 CCDC170Q8IYT3 715 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.41□□□□□ -0.42
SS18-225ENST00000585121 PQLC3Q8N755 202 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 OR56A4Q8NGH8 313 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 TPCN2Q8NHX9 752 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 MDM1Q8TC05 714 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 IFI44Q8TCB0 444 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 MAPK15Q8TD08 544 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 NXPE2Q96DL1 559 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 NUS1Q96E22 293 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 SCRN2Q96FV2 425 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 NSMCE3Q96MG7 304 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 TCEAL2Q9H3H9 227 aaPredicted RBP12.41□□□□□ -0.42
SS18-225ENST00000585121 WDR26Q9H7D7 661 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 GRPEL1Q9HAV7 217 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 DKK4Q9UBT3 224 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 DNPEPQ9ULA0 475 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 HEY1Q9Y5J3 304 aa12.41□□□□□ -0.42
SS18-225ENST00000585121 PSMD11O00231 422 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 YY2O15391 372 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 OPA1O60313 960 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 GCATO75600 419 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 CYLC1P35663 651 aaPredicted RBP12.4□□□□□ -0.42
SS18-225ENST00000585121 CLDN6P56747 220 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 GBE1Q04446 702 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 PDK1Q15118 436 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 TCEAL1Q15170 157 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 CNGA3Q16281 694 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 CDKN3Q16667 212 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 ALG11Q2TAA5 492 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 C6orf132Q5T0Z8 1188 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 PNCKQ6P2M8 343 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 LVRNQ6Q4G3 990 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 EFL1Q7Z2Z2 1120 aaKnown RBP12.4□□□□□ -0.42
SS18-225ENST00000585121 RFX6Q8HWS3 928 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 TC2NQ8N9U0 490 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 PLA2G15Q8NCC3 412 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 NAT6Q93015 286 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 HDAC11Q96DB2 347 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 COQ10AQ96MF6 247 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 DEPDC7Q96QD5 511 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 CAAP1Q9H8G2 361 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 PHPT1Q9NRX4 125 aaPredicted RBP12.4□□□□□ -0.42
SS18-225ENST00000585121 DTLQ9NZJ0 730 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 MOSPD1Q9UJG1 213 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 PPIL1Q9Y3C6 166 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 AK5Q9Y6K8 562 aa12.4□□□□□ -0.42
SS18-225ENST00000585121 TDRD6O60522 2096 aaKnown RBP12.4□□□□□ -0.43
SS18-225ENST00000585121 ANKRD11Q6UB99 2663 aaPredicted RBP12.39□□□□□ -0.43
SS18-225ENST00000585121 GOLGA6CA6NDK9 693 aa12.39□□□□□ -0.43
SS18-225ENST00000585121 GOLGA6BA6NDN3 693 aa12.39□□□□□ -0.43
SS18-225ENST00000585121 TNFRSF10CO14798 259 aa12.39□□□□□ -0.43
SS18-225ENST00000585121 PPP1R12AO14974 1030 aaPredicted RBP12.39□□□□□ -0.43
SS18-225ENST00000585121 IPO7O95373 1038 aaKnown RBP12.39□□□□□ -0.43
SS18-225ENST00000585121 JCHAINP01591 159 aa12.39□□□□□ -0.43
SS18-225ENST00000585121 CAPNS1P04632 268 aa12.39□□□□□ -0.43
SS18-225ENST00000585121 GOLGA6DP0CG33 693 aa12.39□□□□□ -0.43
SS18-225ENST00000585121 MYF5P13349 255 aa12.39□□□□□ -0.43
SS18-225ENST00000585121 TRIM23P36406 574 aa12.39□□□□□ -0.43
SS18-225ENST00000585121 DSC2Q02487 901 aa12.39□□□□□ -0.43
SS18-225ENST00000585121 AP1B1Q10567 949 aa12.39□□□□□ -0.43
SS18-225ENST00000585121 ALG1LQ6GMV1 187 aa12.39□□□□□ -0.43
SS18-225ENST00000585121 BZW1Q7L1Q6 419 aaKnown RBP12.39□□□□□ -0.43
SS18-225ENST00000585121 DCBLD1Q8N8Z6 715 aa12.39□□□□□ -0.43
SS18-225ENST00000585121 FUBP1Q96AE4 644 aaKnown RBP12.39□□□□□ -0.43
SS18-225ENST00000585121 MCCC1Q96RQ3 725 aaPredicted RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms