RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	USP7	Q93009	1102 aa		13.64	□□□□□ -0.23
SS18-222	ENST00000582792	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.64	□□□□□ -0.23
SS18-222	ENST00000582792	ZNF641	Q96N77	438 aa	Predicted RBP	13.64	□□□□□ -0.23
SS18-222	ENST00000582792	C11orf70	Q9BRQ4	267 aa		13.64	□□□□□ -0.23
SS18-222	ENST00000582792	RBSN	Q9H1K0	784 aa		13.64	□□□□□ -0.23
SS18-222	ENST00000582792	FGF22	Q9HCT0	170 aa		13.64	□□□□□ -0.23
SS18-222	ENST00000582792	FAM207A	Q9NSI2	230 aa	Predicted RBP	13.64	□□□□□ -0.23
SS18-222	ENST00000582792	IFNK	Q9P0W0	207 aa		13.64	□□□□□ -0.23
SS18-222	ENST00000582792	LRIT1	Q9P2V4	623 aa		13.64	□□□□□ -0.23
SS18-222	ENST00000582792	PCDHB11	Q9Y5F2	797 aa		13.64	□□□□□ -0.23
SS18-222	ENST00000582792	CFAP69	A5D8W1	941 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	TMEM202	A6NGA9	273 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	WASH4P	A8MWX3	477 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	13.63	□□□□□ -0.23
SS18-222	ENST00000582792	AGRP	O00253	132 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	CACNB4	O00305	520 aa	Predicted RBP	13.63	□□□□□ -0.23
SS18-222	ENST00000582792	NUDT21	O43809	227 aa	Known RBP	13.63	□□□□□ -0.23
SS18-222	ENST00000582792	KRT3	P12035	628 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	CHRNB2	P17787	502 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	RFC1	P35251	1148 aa	Predicted RBP	13.63	□□□□□ -0.23
SS18-222	ENST00000582792	STAT1	P42224	750 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	KLK7	P49862	253 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	GSC	P56915	257 aa	Predicted RBP	13.63	□□□□□ -0.23
SS18-222	ENST00000582792	POLR2F	P61218	127 aa	Known RBP	13.63	□□□□□ -0.23
SS18-222	ENST00000582792	FMO1	Q01740	532 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	PTP4A2	Q12974	167 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	ARHGEF7	Q14155	803 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	EFHC2	Q5JST6	749 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	CFAP58	Q5T655	872 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	ZSWIM9	Q86XI8	627 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	SFTPA2	Q8IWL1	248 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	UMODL1-AS1	Q8N2C9	162 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	HTR3C	Q8WXA8	447 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	FUBP1	Q96AE4	644 aa	Known RBP	13.63	□□□□□ -0.23
SS18-222	ENST00000582792	TUBGCP5	Q96RT8	1024 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	B3GNT4	Q9C0J1	378 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	CATSPERB	Q9H7T0	1116 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	PDF	Q9HBH1	243 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792	UBA2	Q9UBT2	640 aa	Predicted RBP	13.63	□□□□□ -0.23
SS18-222	ENST00000582792	ATP8A1	Q9Y2Q0	1164 aa		13.63	□□□□□ -0.23
SS18-222	ENST00000582792		B4DGG1	531 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	TNFRSF10C	O14798	259 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	EPHB6	O15197	1021 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	BUB1B	O60566	1050 aa	Predicted RBP	13.62	□□□□□ -0.23
SS18-222	ENST00000582792	PPFIA2	O75334	1257 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	RECQL5	O94762	991 aa	Predicted RBP	13.62	□□□□□ -0.23
SS18-222	ENST00000582792	GFPT2	O94808	682 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	PRKCG	P05129	697 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	HOXC4	P09017	264 aa	Predicted RBP	13.62	□□□□□ -0.23
SS18-222	ENST00000582792	GPD1	P21695	349 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	KEL	P23276	732 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	SOX5	P35711	763 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	CYP4F2	P78329	520 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	B4GALNT1	Q00973	533 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	SRSF1	Q07955	248 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
SS18-222	ENST00000582792	C16orf72	Q14CZ0	275 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	MAP9	Q49MG5	647 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	PHF19	Q5T6S3	580 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	SPECC1L	Q69YQ0	1117 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	TRIM72	Q6ZMU5	477 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	CAMK1D	Q8IU85	385 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	XPO4	Q9C0E2	1151 aa	Known RBP	13.62	□□□□□ -0.23
SS18-222	ENST00000582792	TMEM168	Q9H0V1	697 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	SLC25A18	Q9H1K4	315 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	SEMA6C	Q9H3T2	930 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	DPEP2	Q9H4A9	486 aa		13.62	□□□□□ -0.23
SS18-222	ENST00000582792	MRPL40	Q9NQ50	206 aa	Known RBP	13.62	□□□□□ -0.23
SS18-222	ENST00000582792	GEMIN8	Q9NWZ8	242 aa	Known RBP	13.62	□□□□□ -0.23
SS18-222	ENST00000582792		A0A1W2PQJ5	194 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792		J3KR12	359 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	CREB3	O43889	395 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	CCDC172	P0C7W6	258 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	UNG	P13051	313 aa	Predicted RBP	13.61	□□□□□ -0.23
SS18-222	ENST00000582792	TRIM23	P36406	574 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	RALGDS	Q12967	914 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	CLCA4	Q14CN2	919 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	COLEC12	Q5KU26	742 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	TMEM164	Q5U3C3	297 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	WDR59	Q6PJI9	974 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	ZNF574	Q6ZN55	896 aa	Predicted RBP	13.61	□□□□□ -0.23
SS18-222	ENST00000582792	PIM3	Q86V86	326 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	CCL4L1	Q8NHW4	92 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	KIAA1524	Q8TCG1	905 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	SELENOO	Q9BVL4	669 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	LRRC19	Q9H756	370 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	ATP13A3	Q9H7F0	1226 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	ADAM22	Q9P0K1	906 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	AKAP7	Q9P0M2	348 aa	Predicted RBP	13.61	□□□□□ -0.23
SS18-222	ENST00000582792	FZD10	Q9ULW2	581 aa		13.61	□□□□□ -0.23
SS18-222	ENST00000582792	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
SS18-222	ENST00000582792	STMND1	H3BQB6	276 aa		13.6	□□□□□ -0.23
SS18-222	ENST00000582792	FGF10	O15520	208 aa	Predicted RBP	13.6	□□□□□ -0.23
SS18-222	ENST00000582792	CCP110	O43303	1012 aa		13.6	□□□□□ -0.23
SS18-222	ENST00000582792	B4GAT1	O43505	415 aa		13.6	□□□□□ -0.23
SS18-222	ENST00000582792	PRAMEF11	O60813	436 aa		13.6	□□□□□ -0.23
SS18-222	ENST00000582792	CPNE6	O95741	557 aa		13.6	□□□□□ -0.23
SS18-222	ENST00000582792	ELFN1	P0C7U0	828 aa		13.6	□□□□□ -0.23
SS18-222	ENST00000582792	SERPINA4	P29622	427 aa		13.6	□□□□□ -0.23
SS18-222	ENST00000582792	NSF	P46459	744 aa	Known RBP	13.6	□□□□□ -0.23
SS18-222	ENST00000582792	RGR	P47804	291 aa		13.6	□□□□□ -0.23

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