RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 PDE1CQ14123 709 aaPredicted RBP10.55□□□□□ -0.72
SS18-217ENST00000580958 PDGFRLQ15198 375 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 PTPRRQ15256 657 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 DLG2Q15700 870 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 UGP2Q16851 508 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 GAB4Q2WGN9 574 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 MYLK3Q32MK0 819 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 CARD16Q5EG05 197 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 FSTL4Q6MZW2 842 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 CES5AQ6NT32 575 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 VITQ6UXI7 678 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 CDHR3Q6ZTQ4 885 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 EP400NLQ6ZTU2 488 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 ZNF771Q7L3S4 317 aaPredicted RBP10.55□□□□□ -0.72
SS18-217ENST00000580958 PTAR1Q7Z6K3 402 aaPredicted RBP10.55□□□□□ -0.72
SS18-217ENST00000580958 CMC1Q7Z7K0 106 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 ZC3HC1Q86WB0 502 aaKnown RBP10.55□□□□□ -0.72
SS18-217ENST00000580958 SLC41A1Q8IVJ1 513 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 LRRC34Q8IZ02 419 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 CNPY4Q8N129 248 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 TTC30BQ8N4P2 665 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 PAF1Q8N7H5 531 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 ACVR1CQ8NER5 493 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 OR4K2Q8NGD2 314 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 CALML6Q8TD86 181 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 BCAS4Q8TDM0 211 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 ACMSDQ8TDX5 336 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 PIH1D2Q8WWB5 315 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 SORCS1Q8WY21 1168 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 PEX13Q92968 403 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 ISL2Q96A47 359 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 MRGPRX3Q96LB0 322 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 MAGEB18Q96M61 343 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 ZNF317Q96PQ6 595 aaPredicted RBP10.55□□□□□ -0.72
SS18-217ENST00000580958 FAM111AQ96PZ2 611 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 GPR22Q99680 433 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 FAM83CQ9BQN1 747 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 PLA2G2FQ9BZM2 168 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 SLC13A1Q9BZW2 595 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 IQCGQ9H095 443 aaKnown RBP10.55□□□□□ -0.72
SS18-217ENST00000580958 FAM107BQ9H098 131 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 ATP13A3Q9H7F0 1226 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 CAB39LQ9H9S4 337 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 ZFP14Q9HCL3 533 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 HPS4Q9NQG7 708 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 SNX15Q9NRS6 342 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 NLE1Q9NVX2 485 aaPredicted RBP10.55□□□□□ -0.72
SS18-217ENST00000580958 POLR3BQ9NW08 1133 aaPredicted RBP10.55□□□□□ -0.72
SS18-217ENST00000580958 THG1LQ9NWX6 298 aaKnown RBP10.55□□□□□ -0.72
SS18-217ENST00000580958 CLDND1Q9NY35 253 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 MARCH4Q9P2E8 410 aaPredicted RBP10.55□□□□□ -0.72
SS18-217ENST00000580958 FBXO5Q9UKT4 447 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 GRID1Q9ULK0 1009 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 ZNF711Q9Y462 761 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 FAM95CA0A1B0GW59 222 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 WDR91A4D1P6 747 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 C2orf81A6NN90 581 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 TCP11X1B4DZS4 312 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 TRAFD1O14545 582 aaPredicted RBP10.54□□□□□ -0.72
SS18-217ENST00000580958 SOCS5O75159 536 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 TULP3O75386 442 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 TOP3BO95985 862 aaKnown RBP10.54□□□□□ -0.72
SS18-217ENST00000580958 MPOP05164 745 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 VIMP08670 466 aaKnown RBP10.54□□□□□ -0.72
SS18-217ENST00000580958 ALPIP09923 528 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 TAC1P20366 129 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 LPOP22079 712 aaPredicted RBP10.54□□□□□ -0.72
SS18-217ENST00000580958 TYK2P29597 1187 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 SERPINA4P29622 427 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 CRHR1P34998 444 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 GMPRP36959 345 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 CCNHP51946 323 aaPredicted RBP10.54□□□□□ -0.72
SS18-217ENST00000580958 RPL26P61254 145 aaKnown RBP10.54□□□□□ -0.72
SS18-217ENST00000580958 GRM2Q14416 872 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 ZNF789Q5FWF6 425 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 PPM1JQ5JR12 505 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 GRAMD4Q6IC98 578 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 C16orf46Q6P387 395 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 DPY19L3Q6ZPD9 716 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 KIAA0408Q6ZU52 694 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 Q6ZVU0 165 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 LDB1Q86U70 411 aaPredicted RBP10.54□□□□□ -0.72
SS18-217ENST00000580958 MFSD6LQ8IWD5 586 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 ETFBKMTQ8IXQ9 262 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 YAF2Q8IY57 180 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 PNPLA1Q8N8W4 532 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 CHST14Q8NCH0 376 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 GABPB2Q8TAK5 448 aaPredicted RBP10.54□□□□□ -0.72
SS18-217ENST00000580958 CHMP6Q96FZ7 201 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 CDKN2AIPNLQ96HQ2 116 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 CCT8L2Q96SF2 557 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 KXD1Q9BQD3 176 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 CIPCQ9C0C6 399 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 S1PR5Q9H228 398 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 VPS11Q9H270 941 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 PRO3102Q9H379 93 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 ZDHHC6Q9H6R6 413 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 ECT2Q9H8V3 914 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 CATSPERZQ9NTU4 200 aa10.54□□□□□ -0.72
SS18-217ENST00000580958 HACD3Q9P035 362 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms