RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 EBAG9O00559 213 aa8□□□□□ -1.13
VPS39-213ENST00000570062 KLF11O14901 512 aa8□□□□□ -1.13
VPS39-213ENST00000570062 HTRA2O43464 458 aaPredicted RBP8□□□□□ -1.13
VPS39-213ENST00000570062 FZD6O60353 706 aa8□□□□□ -1.13
VPS39-213ENST00000570062 H2AFYO75367 372 aaKnown RBP8□□□□□ -1.13
VPS39-213ENST00000570062 RFPL1O75677 317 aa8□□□□□ -1.13
VPS39-213ENST00000570062 VIMP08670 466 aaKnown RBP8□□□□□ -1.13
VPS39-213ENST00000570062 ERVK-10P10266 1014 aa8□□□□□ -1.13
VPS39-213ENST00000570062 ADH5P11766 374 aa8□□□□□ -1.13
VPS39-213ENST00000570062 NEFHP12036 1026 aa8□□□□□ -1.13
VPS39-213ENST00000570062 STMN1P16949 149 aa8□□□□□ -1.13
VPS39-213ENST00000570062 NMBRP28336 390 aa8□□□□□ -1.13
VPS39-213ENST00000570062 EIF2DP41214 584 aaKnown RBP8□□□□□ -1.13
VPS39-213ENST00000570062 LEPRP48357 1165 aaKnown RBP8□□□□□ -1.13
VPS39-213ENST00000570062 ARCN1P48444 511 aaKnown RBP8□□□□□ -1.13
VPS39-213ENST00000570062 DGKGP49619 791 aa8□□□□□ -1.13
VPS39-213ENST00000570062 SGSHP51688 502 aa8□□□□□ -1.13
VPS39-213ENST00000570062 CRADDP78560 199 aa8□□□□□ -1.13
VPS39-213ENST00000570062 MSLNQ13421 630 aaPredicted RBP8□□□□□ -1.13
VPS39-213ENST00000570062 MTM1Q13496 603 aa8□□□□□ -1.13
VPS39-213ENST00000570062 DHCR24Q15392 516 aa8□□□□□ -1.13
VPS39-213ENST00000570062 SLC5A9Q2M3M2 681 aa8□□□□□ -1.13
VPS39-213ENST00000570062 MYLK3Q32MK0 819 aa8□□□□□ -1.13
VPS39-213ENST00000570062 CARD16Q5EG05 197 aa8□□□□□ -1.13
VPS39-213ENST00000570062 UBAP2Q5T6F2 1119 aaKnown RBP8□□□□□ -1.13
VPS39-213ENST00000570062 ESRP1Q6NXG1 681 aaKnown RBP8□□□□□ -1.13
VPS39-213ENST00000570062 AFTPHQ6ULP2 937 aa8□□□□□ -1.13
VPS39-213ENST00000570062 TMC5Q6UXY8 1006 aa8□□□□□ -1.13
VPS39-213ENST00000570062 SH2D5Q6ZV89 423 aa8□□□□□ -1.13
VPS39-213ENST00000570062 MTSS1LQ765P7 747 aa8□□□□□ -1.13
VPS39-213ENST00000570062 GLT6D1Q7Z4J2 308 aa8□□□□□ -1.13
VPS39-213ENST00000570062 TMEM25Q86YD3 366 aa8□□□□□ -1.13
VPS39-213ENST00000570062 SUGP1Q8IWZ8 645 aaKnown RBP8□□□□□ -1.13
VPS39-213ENST00000570062 STK40Q8N2I9 435 aa8□□□□□ -1.13
VPS39-213ENST00000570062 CPA6Q8N4T0 437 aa8□□□□□ -1.13
VPS39-213ENST00000570062 ANKRD42Q8N9B4 389 aa8□□□□□ -1.13
VPS39-213ENST00000570062 C2CD4AQ8NCU7 369 aaPredicted RBP8□□□□□ -1.13
VPS39-213ENST00000570062 OR52K2Q8NGK3 314 aa8□□□□□ -1.13
VPS39-213ENST00000570062 OR6P1Q8NGX9 317 aa8□□□□□ -1.13
VPS39-213ENST00000570062 OR4L1Q8NH43 312 aa8□□□□□ -1.13
VPS39-213ENST00000570062 RDH11Q8TC12 318 aa8□□□□□ -1.13
VPS39-213ENST00000570062 TCP10LQ8TDR4 215 aa8□□□□□ -1.13
VPS39-213ENST00000570062 UCMAQ8WVF2 138 aa8□□□□□ -1.13
VPS39-213ENST00000570062 WBP2Q969T9 261 aa8□□□□□ -1.13
VPS39-213ENST00000570062 LMLNQ96KR4 655 aa8□□□□□ -1.13
VPS39-213ENST00000570062 ASB16Q96NS5 453 aa8□□□□□ -1.13
VPS39-213ENST00000570062 CCT8L2Q96SF2 557 aa8□□□□□ -1.13
VPS39-213ENST00000570062 GPR22Q99680 433 aa8□□□□□ -1.13
VPS39-213ENST00000570062 CDH19Q9H159 772 aa8□□□□□ -1.13
VPS39-213ENST00000570062 FAM96AQ9H5X1 160 aa8□□□□□ -1.13
VPS39-213ENST00000570062 NLE1Q9NVX2 485 aaPredicted RBP8□□□□□ -1.13
VPS39-213ENST00000570062 APPL1Q9UKG1 709 aa8□□□□□ -1.13
VPS39-213ENST00000570062 FBXO5Q9UKT4 447 aa8□□□□□ -1.13
VPS39-213ENST00000570062 PLLPQ9Y342 182 aa8□□□□□ -1.13
VPS39-213ENST00000570062 PPIL1Q9Y3C6 166 aa8□□□□□ -1.13
VPS39-213ENST00000570062 MYO16Q9Y6X6 1858 aa8□□□□□ -1.13
VPS39-213ENST00000570062 GREB1Q4ZG55 1949 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 MUC3AQ02505 3323 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 RGSL1A5PLK6 1076 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 MUSKO15146 869 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 STX7O15400 261 aaKnown RBP7.99□□□□□ -1.13
VPS39-213ENST00000570062 LDB2O43679 373 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 SNAP91O60641 907 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 ARHGEF15O94989 841 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 PGLSO95336 258 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 CD160O95971 181 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 IL1BP01584 269 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 DLDP09622 509 aaKnown RBP7.99□□□□□ -1.13
VPS39-213ENST00000570062 CEBPBP17676 345 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 POU3F3P20264 500 aaPredicted RBP7.99□□□□□ -1.13
VPS39-213ENST00000570062 CD9P21926 228 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 GRK2P25098 689 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 PMLP29590 882 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 HLA-FP30511 346 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 RPA3P35244 121 aaPredicted RBP7.99□□□□□ -1.13
VPS39-213ENST00000570062 HMGCLP35914 325 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 SKIV2L2P42285 1042 aaKnown RBP7.99□□□□□ -1.13
VPS39-213ENST00000570062 MAGEA12P43365 314 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 TTPAP49638 278 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 NEK3P51956 506 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 NAA20P61599 178 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 CCDC15Q0P6D6 951 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 ADAM15Q13444 863 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 USP10Q14694 798 aaKnown RBP7.99□□□□□ -1.13
VPS39-213ENST00000570062 FASTKD1Q53R41 847 aaKnown RBP7.99□□□□□ -1.13
VPS39-213ENST00000570062 LY6G5CQ5SRR4 150 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 FAM109BQ6ICB4 259 aaPredicted RBP7.99□□□□□ -1.13
VPS39-213ENST00000570062 FSTL4Q6MZW2 842 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 FAM45BPQ6NSW5 357 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 UGT3A1Q6NUS8 523 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 KLC3Q6P597 504 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 BRAT1Q6PJG6 821 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 LVRNQ6Q4G3 990 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 USP45Q70EL2 814 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 KDELC2Q7Z4H8 507 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 ADGRD2Q7Z7M1 963 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 ZC3HC1Q86WB0 502 aaKnown RBP7.99□□□□□ -1.13
VPS39-213ENST00000570062 CILP2Q8IUL8 1156 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 MFSD6LQ8IWD5 586 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 APCDD1Q8J025 514 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms