RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 OR56A4Q8NGH8 313 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 GFM1Q96RP9 751 aaKnown RBP17.19■□□□□ 0.34
CLN3-216ENST00000565316 FGF22Q9HCT0 170 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 APPL1Q9UKG1 709 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 SCINQ9Y6U3 715 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 KIF26BQ2KJY2 2108 aa17.18■□□□□ 0.34
CLN3-216ENST00000565316 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.18■□□□□ 0.34
CLN3-216ENST00000565316 A0A1W2PQM1 296 aa17.18■□□□□ 0.34
CLN3-216ENST00000565316 D6RAR5 112 aa17.18■□□□□ 0.34
CLN3-216ENST00000565316 HTRA2O43464 458 aaPredicted RBP17.18■□□□□ 0.34
CLN3-216ENST00000565316 TNFSF15O95150 251 aa17.18■□□□□ 0.34
CLN3-216ENST00000565316 KELP23276 732 aa17.18■□□□□ 0.34
CLN3-216ENST00000565316 SLC10A7Q0GE19 358 aa17.18■□□□□ 0.34
CLN3-216ENST00000565316 EIF3IQ13347 325 aaKnown RBP17.18■□□□□ 0.34
CLN3-216ENST00000565316 LBRQ14739 615 aaKnown RBP17.18■□□□□ 0.34
CLN3-216ENST00000565316 TCEA2Q15560 299 aa17.18■□□□□ 0.34
CLN3-216ENST00000565316 DPYSL2Q16555 572 aa17.18■□□□□ 0.34
CLN3-216ENST00000565316 CBARPQ8N350 705 aaPredicted RBP17.18■□□□□ 0.34
CLN3-216ENST00000565316 COQ10AQ96MF6 247 aa17.18■□□□□ 0.34
CLN3-216ENST00000565316 ISCUQ9H1K1 167 aa17.18■□□□□ 0.34
CLN3-216ENST00000565316 ASH1LQ9NR48 2969 aaKnown RBP17.18■□□□□ 0.34
CLN3-216ENST00000565316 PCDHGA7Q9Y5G6 932 aa17.18■□□□□ 0.34
CLN3-216ENST00000565316 A0A1B0GTH6 734 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 SMTNL1A8MU46 457 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 PLD2O14939 933 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 NOBOXO60393 691 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 RPLP0P05388 317 aaKnown RBP17.17■□□□□ 0.34
CLN3-216ENST00000565316 MYBL1P10243 752 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 PNLIPP16233 465 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 CR2P20023 1033 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 IL1R2P27930 398 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 CCKBRP32239 447 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 HSPA9P38646 679 aaKnown RBP17.17■□□□□ 0.34
CLN3-216ENST00000565316 CFHR1Q03591 330 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 KLHL30Q0D2K2 578 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 BOLA3Q53S33 107 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 CERCAMQ5T4B2 595 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 PNCKQ6P2M8 343 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 FOXR1Q6PIV2 292 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 POLNQ7Z5Q5 900 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 PELI3Q8N2H9 469 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 ZNF653Q96CK0 615 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 TRIM11Q96F44 468 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 LGR4Q9BXB1 951 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 LRRN3Q9H3W5 708 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 SYNDIG1Q9H7V2 258 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 ZWILCHQ9H900 591 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 MRPL47Q9HD33 250 aaKnown RBP17.17■□□□□ 0.34
CLN3-216ENST00000565316 ETNK2Q9NVF9 386 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 TMEM63CQ9P1W3 806 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 B4GALT6Q9UBX8 382 aa17.17■□□□□ 0.34
CLN3-216ENST00000565316 AHCTF1Q8WYP5 2266 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 A0A1W2PQ67 120 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 CAPN8A6NHC0 703 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 H3BRJ5 948 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 K7ENP7 123 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 SOCS5O75159 536 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 GLB1P16278 677 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 UGT1A5P35504 534 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 INHBCP55103 352 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 CLN3Q13286 438 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 FILIP1LQ4L180 1135 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 INO80CQ6PI98 192 aaPredicted RBP17.16■□□□□ 0.34
CLN3-216ENST00000565316 TAF8Q7Z7C8 310 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 FBXO39Q8N4B4 442 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 FAM46DQ8NEK8 389 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 TTC9Q92623 222 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 TMEM74Q96NL1 305 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 NAP1L5Q96NT1 182 aaPredicted RBP17.16■□□□□ 0.34
CLN3-216ENST00000565316 NUDCD1Q96RS6 583 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 STRADBQ9C0K7 418 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 TMEM168Q9H0V1 697 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 WDR26Q9H7D7 661 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 MRPL40Q9NQ50 206 aaKnown RBP17.16■□□□□ 0.34
CLN3-216ENST00000565316 ACSL6Q9UKU0 697 aa17.16■□□□□ 0.34
CLN3-216ENST00000565316 TTC24A2A3L6 582 aaPredicted RBP17.15■□□□□ 0.34
CLN3-216ENST00000565316 PDE2AO00408 941 aaPredicted RBP17.15■□□□□ 0.34
CLN3-216ENST00000565316 MAFKO60675 156 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 TCF4P15884 667 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 AMPD1P23109 780 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 ZFP36L1Q07352 338 aaKnown RBP17.15■□□□□ 0.34
CLN3-216ENST00000565316 HLTFQ14527 1009 aaKnown RBP eCLIP17.15■□□□□ 0.34
CLN3-216ENST00000565316 ACOX1Q15067 660 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 CNGA3Q16281 694 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 C14orf28Q4W4Y0 310 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 TAF1BQ53T94 588 aaPredicted RBP17.15■□□□□ 0.34
CLN3-216ENST00000565316 RAB11FIP2Q7L804 512 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 CCNJLQ8IV13 435 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 PGBD5Q8N414 524 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 CSPG4P5Q96PW8 444 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 MGME1Q9BQP7 344 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 FOXP3Q9BZS1 431 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 NOD2Q9HC29 1040 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 EPB41L5Q9HCM4 733 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 CYP4F12Q9HCS2 524 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 KCTD5Q9NXV2 234 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 PCDHGC4Q9Y5F7 938 aa17.15■□□□□ 0.34
CLN3-216ENST00000565316 COL6A6A6NMZ7 2263 aa17.14■□□□□ 0.34
CLN3-216ENST00000565316 ANKRD36A6QL64 1941 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 A8MX80 341 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms