RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 PRTGQ2VWP7 1150 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 USP41Q3LFD5 358 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 ZSCAN23Q3MJ62 389 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 C6orf141Q5SZD1 244 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 HIST2H2BCQ6DN03 193 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 HIST2H2BDQ6DRA6 164 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 DPY19L2P1Q6NXN4 242 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 GLDNQ6ZMI3 551 aaPredicted RBP4.82□□□□□ -1.64
LINC00560-201ENST00000564593 LINGO2Q7L985 606 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 TICAM1Q8IUC6 712 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 TEX11Q8IYF3 940 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 TAGAPQ8N103 731 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 C1orf131Q8NDD1 294 aaKnown RBP4.82□□□□□ -1.64
LINC00560-201ENST00000564593 SGCDQ92629 289 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 APOLD1Q96LR9 279 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 TMEM47Q9BQJ4 181 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 TMEM79Q9BSE2 394 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 MAK16Q9BXY0 300 aaKnown RBP4.82□□□□□ -1.64
LINC00560-201ENST00000564593 CATSPERBQ9H7T0 1116 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 KRCC1Q9NPI7 259 aaPredicted RBP4.82□□□□□ -1.64
LINC00560-201ENST00000564593 PCDHGB4Q9UN71 923 aa4.82□□□□□ -1.64
LINC00560-201ENST00000564593 A8MZ25 164 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 AKR1B15C9JRZ8 316 aaPredicted RBP4.81□□□□□ -1.64
LINC00560-201ENST00000564593 MS4A18H0YCH9 400 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 I6L893 689 aaPredicted RBP4.81□□□□□ -1.64
LINC00560-201ENST00000564593 SCAMP1O15126 338 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 NDUFB4O95168 129 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 GNLYP22749 145 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 CHATP28329 748 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 PIK3CAP42336 1068 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 RAD52P43351 418 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 PLCD1P51178 756 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 GALCP54803 685 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 ZP1P60852 638 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 NUCB1Q02818 461 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 AIMP2Q13155 320 aaKnown RBP4.81□□□□□ -1.64
LINC00560-201ENST00000564593 NEDD9Q14511 834 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 C2orf68Q2NKX9 166 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 COLCA1Q6ZS62 124 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 Q6ZTK2 550 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 ENOSF1Q7L5Y1 443 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 ZNF367Q7RTV3 350 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 SCCPDHQ8NBX0 429 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 ARRDC2Q8TBH0 407 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 ERGIC1Q969X5 290 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 SLC41A2Q96JW4 573 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 FAM110AQ9BQ89 295 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 PDZD7Q9H5P4 517 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 ZBTB40Q9NUA8 1239 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 POT1Q9NUX5 634 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 TMEM51Q9NW97 253 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 CLIC5Q9NZA1 410 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 ERVK-11Q9UQG0 969 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 TMEM5Q9Y2B1 443 aa4.81□□□□□ -1.64
LINC00560-201ENST00000564593 FAM90A8PA6NJQ4 464 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 PPEF2O14830 753 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 ITM2AO43736 263 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 STARD3NLO95772 234 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 FAM90A13PP0C7W8 464 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 FAM90A24PP0C7X0 464 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 CD58P19256 250 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 TNFRSF1BP20333 461 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 GCH1P30793 250 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 ACSL1P33121 698 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 PPATQ06203 517 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 ST3GAL1Q11201 340 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 EPS8Q12929 822 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 MYBPC2Q14324 1141 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 IRF3Q14653 427 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 NAB2Q15742 525 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 KRT24Q2M2I5 525 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 ZNF284Q2VY69 593 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 ODF3L2Q3SX64 289 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 PLEKHS1Q5SXH7 462 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 Q6ZSV7 163 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 PIM3Q86V86 326 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 WDR63Q8IWG1 891 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 MIGA1Q8NAN2 632 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 NAF1Q96HR8 494 aaKnown RBP4.8□□□□□ -1.64
LINC00560-201ENST00000564593 PGAM5Q96HS1 289 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 GPR108Q9NPR9 543 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 ELOVL5Q9NYP7 299 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 MAU2Q9Y6X3 613 aa4.8□□□□□ -1.64
LINC00560-201ENST00000564593 LY6G6EA0A0G2JKS1 128 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 A0A1W2PQ09 198 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 RPS10-NUDT3A0A1W2PQS6 291 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 TMEM202A6NGA9 273 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 BECN2A8MW95 431 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 B4DLN1 442 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 HCRTR2O43614 444 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 TIMM44O43615 452 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 TMCC2O75069 709 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 RB1P06400 928 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 TMEM11P17152 192 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 FBLP22087 321 aaKnown RBP4.79□□□□□ -1.64
LINC00560-201ENST00000564593 PIGAP37287 484 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 CLCN3P51790 818 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 PMS2P54278 862 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 MRPS21P82921 87 aaKnown RBP4.79□□□□□ -1.64
LINC00560-201ENST00000564593 ADORA2A-AS1P86434 159 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms