RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 THRAP10827 490 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 CCNB1P14635 433 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 COL8A1P27658 744 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 MAN1A1P33908 653 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 TSPAN7P41732 249 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 GPR3P46089 330 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 PTK2Q05397 1052 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 ABHD18Q0P651 414 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 ILF3Q12906 894 aaKnown RBP eCLIP7.35□□□□□ -1.23
VPS4A-203ENST00000564399 SNAP47Q5SQN1 464 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 ISM2Q6H9L7 571 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 KLHL10Q6JEL2 608 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 CEACAM20Q6UY09 585 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 ZNF438Q7Z4V0 828 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 FAM114A1Q8IWE2 563 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 SMARCE1Q969G3 411 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 NT5C3BQ969T7 300 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 VOPP1Q96AW1 172 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 RTP4Q96DX8 246 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 AHCYL2Q96HN2 611 aaKnown RBP7.35□□□□□ -1.23
VPS4A-203ENST00000564399 DHTKD1Q96HY7 919 aaPredicted RBP7.35□□□□□ -1.23
VPS4A-203ENST00000564399 EXOC2Q96KP1 924 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 FAM81BQ96LP2 452 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 CTRCQ99895 268 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 DPYSL5Q9BPU6 564 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 GSDMCQ9BYG8 508 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 TRIT1Q9H3H1 467 aaKnown RBP7.35□□□□□ -1.23
VPS4A-203ENST00000564399 SUV39H2Q9H5I1 410 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 CARS2Q9HA77 564 aaKnown RBP7.35□□□□□ -1.23
VPS4A-203ENST00000564399 PLCB1Q9NQ66 1216 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 TMEM9Q9P0T7 183 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 TAAR2Q9P1P5 351 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 OR12D3Q9UGF7 316 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 MFHAS1Q9Y4C4 1052 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 KCTD3Q9Y597 815 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 PCDHB3Q9Y5E6 796 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 KCNMB2Q9Y691 235 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 F8P00451 2351 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 MDC1Q14676 2089 aaKnown RBP7.35□□□□□ -1.23
VPS4A-203ENST00000564399 ITPR3Q14573 2671 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 CRYBG3Q68DQ2 2970 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 IGHV1OR21-1A0A087WYE8 117 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 PRSS38A1L453 326 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 RECQL5O94762 991 aaPredicted RBP7.34□□□□□ -1.23
VPS4A-203ENST00000564399 RHOQP17081 205 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 AK4P27144 223 aaPredicted RBP7.34□□□□□ -1.23
VPS4A-203ENST00000564399 CSF2RBP32927 897 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 FLT3P36888 993 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 MMP12P39900 470 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 STAT1P42224 750 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 ATP11AP98196 1134 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 RAPGEF1Q13905 1077 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 NR1D2Q14995 579 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 AGERQ15109 404 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 INO80DQ53TQ3 878 aaPredicted RBP7.34□□□□□ -1.23
VPS4A-203ENST00000564399 ARTNQ5T4W7 220 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 TMEM71Q6P5X7 295 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 SLC30A9Q6PML9 568 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 TIPARPQ7Z3E1 657 aaKnown RBP7.34□□□□□ -1.23
VPS4A-203ENST00000564399 PHLDB2Q86SQ0 1253 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 C17orf82Q86X59 251 aaPredicted RBP7.34□□□□□ -1.23
VPS4A-203ENST00000564399 CREBRFQ8IUR6 639 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 TRIM59Q8IWR1 403 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 CPT1CQ8TCG5 803 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 PATE1Q8WXA2 126 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 CASKIN2Q8WXE0 1202 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 C18orf8Q96DM3 657 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 CFAP57Q96MR6 1250 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 PHF12Q96QT6 1004 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 LGR4Q9BXB1 951 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 WDR26Q9H7D7 661 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 CASS4Q9NQ75 786 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 TMEM248Q9NWD8 314 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 CUEDC1Q9NWM3 386 aaPredicted RBP7.34□□□□□ -1.23
VPS4A-203ENST00000564399 ATP8A1Q9Y2Q0 1164 aa7.34□□□□□ -1.23
VPS4A-203ENST00000564399 MRPS18BQ9Y676 258 aaKnown RBP7.34□□□□□ -1.23
VPS4A-203ENST00000564399 CELSR2Q9HCU4 2923 aa7.34□□□□□ -1.24
VPS4A-203ENST00000564399 SVILO95425 2214 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 TRBV23OR9-2A0A075B6M9 112 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 PPM1DO15297 605 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 KATNA1O75449 491 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 RFPL1O75677 317 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 STK17BO94768 372 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 LRIG2O94898 1065 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 GNA14O95837 355 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 DDAH2O95865 285 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 HOXC4P09017 264 aaPredicted RBP7.33□□□□□ -1.24
VPS4A-203ENST00000564399 ELFN1P0C7U0 828 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 RNF224P0DH78 156 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 SLC9A1P19634 815 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 ADRA1BP35368 520 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 TRIM23P36406 574 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 SCNN1AP37088 669 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 DCTP40126 519 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 GNPDA1P46926 289 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 MC2RQ01718 297 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 APBA1Q02410 837 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 PEX6Q13608 980 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 ERV3-1Q14264 604 aa7.33□□□□□ -1.24
VPS4A-203ENST00000564399 GRM3Q14832 879 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms